PASS2
  • Superfamily Details
  • Alignment & HMM
  • Jmol View
  • Features

Superfamily Details

Superfamily summary
Superfamily Name:  Thiamin phosphate synthase
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  TIM beta/alpha-barrel
Number of Members:  2
Average Size: 
Members
SCOP ID Name Source
d2tpsa- Thiamin phosphate synthase Bacillus subtilis [TaxId: 1423]
d1xi3a- Thiamin phosphate synthase Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1xi3a-  (   2 )               nlrnkLkLYVITdrrlk--pEveSVreALeGgAtAIQMr
d2tpsa-  (  10 )    hgirmtrIsremMkelLsVYFIMGsnnTkadpvtVVqkALkGgAtLYQFr
                                aaaa  bbbb         aaaaaaaaaa    bbbb 

                             60        70        80        90        100 
d1xi3a-  (  39 )    Ik--nAp-tremyeiGktLRqlTreydAlFFVddrVdVAlaVdAdGVqLg
d2tpsa-  (  60 )    EkggdAltgearikfAekAqaaCreagvPFIVnddveLAlnlkAdGIhIg
                            aaaaaaaaaaaaaaaaa    bbbb  aaaaaaa   bbbb 

                             110       120       130       140       150 
d1xi3a-  (  86 )    pedmpievAkeiApnLiIGAsVysleeAleaekkgAdYLgAGsVfpt---
d2tpsa-  ( 110 )    qedanakeVraaIgdmILGVsAhtmseVkqAeeDgAdYVgLGPIyptetk
                         aaaaaaa    bbbbbb  aaaaaaaaaa   bbbb         

                             160       170       180       190       200 
d1xi3a-  ( 137 )    -dar-viglegLrkIves-VkipVVAiggInkdnAreVLktgVdGIAVis
d2tpsa-  ( 160 )    kdtravqgvslIeaVrrqgisIPIVGiggItidnAapVIqagAdGVSMis
                             aaaaaaaa      bbbb        aaaa     bbbb a

                             210       220    
d1xi3a-  ( 184 )    aVMgaedVrkaTeeLrkiVeevlg  
d2tpsa-  ( 210 )    aISqaedpesaArkFreeIqtyktgr
                    aaa    aaaaaaaaaaaaaaaa   

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]