PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Triosephosphate isomerase (TIM)
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  TIM beta/alpha-barrel
Number of Members:  3
Average Size: 
Members
SCOP ID Name Source
d1n55a- Triosephosphate isomerase Leishmania mexicana [TaxId: 5665]
d1aw1a- Triosephosphate isomerase Vibrio marinus [TaxId: 90736]
d1w0ma- Triosephosphate isomerase Thermoproteus tenax [TaxId: 2271]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1aw1a-  (   2 )      rhPVVMGNWklnG--skemVvdlLngLnaelegvtgVdVAVAPpalfV
d1n55a-  (   2 )    akpqpIAAANWkcng--ttasIeklVqvFneh-tIshdVqCVVAPtfvhI
d1w0ma-  (   1 )     mrlpILIInFkaygeAagkrAveLAkaAerAarel-gVNIVVAPnhlel
                         bbbbb         aaaaaaaaaaaa        bbbbb  333a

                             60        70        80        90        100 
d1aw1a-  (  48 )    dlAertlteagSa-IiLGAqnTdlnnsgaftgdmSPamLkefgAthIIIG
d1n55a-  (  49 )    plVqakL---rNpkYviSAqnAiak-sgaftgevSMpiLkdigVhWVILG
d1w0ma-  (  49 )    glVSqsV---d---ipVYAqgAdveaggahtahvSLenIkeagGsGVILn
                    aaaa             bb                aaaa      bbbb 

                             110       120       130       140       150 
d1aw1a-  (  97 )    HserreyhaEsdefVakKFafLkengLtPVLCIGEsdaqneagetmaVCa
d1n55a-  (  95 )    HserrtyygEtdeiVAqkVSeACkqgFmVIACIGEtlqqreanqtakvVl
d1w0ma-  (  93 )    hsea----plklndlarLVakAkslgLdVVVCAp----------dprtSl
                               aaaaaaaaaaaaa   bbbbbb            aaaaa

                             160       170       180       190       200 
d1aw1a-  ( 147 )    rqLdaVIntqgveaLegAIIAYEPiwAigtgkaAtAedAqrIHaqIrahI
d1n55a-  ( 145 )    sqTsaIaakLtkdaWnqVVLAYEPvwAigtgkvAtpeqAqeVHllLrkwV
d1w0ma-  ( 129 )    aaAal--------gP--hAVAVEPpeligtgrAV-SrykpeaIveTvglV
                    aaaa              bbbb  333        aaa aaaaaaaaaaa

                             210       220       230       240       250 
d1aw1a-  ( 197 )    aek-seavAknVvIQYGGsV-kpenAaaYFaqpdIDGALVggaAld----
d1n55a-  ( 195 )    senigtdvaakLrILYGgsV-naanAatLyakpdINGFLVggaSlk----
d1w0ma-  ( 168 )    srhf-----peVsVITGagIesgdDVaaALrl-gTrGVLLasaAVkakdp
                    a           bbbb         aaaaa      bbbb          

                             260    
d1aw1a-  ( 241 )    aksFAaIAkaAaeaka
d1n55a-  ( 240 )    -peFrdIIdaTr    
d1w0ma-  ( 212 )    yakIveLAkpLsel  
                       aaaaaa       

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]