PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  PapD-like
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  6
Average Size: 
Members
SCOP ID Name Source
d2j2za1 Pilus chaperone PapD, N-domain Escherichia coli [TaxId: 562]
d3bwuc1 Periplasmic chaperone FimC Escherichia coli [TaxId: 562]
d1p5va1 Chaperone protein Caf1m Yersinia pestis [TaxId: 632]
d1grwa- Major sperm protein, MSP Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1rowa- SSP-19 Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1wica- MSP domain containing protein 2, Mospd2 Mouse (Mus musculus) [TaxId: 10090]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1grwa-  (   3 )                svpPgdIqTqpgtkIvFnapyddkhtyhIkViNss-ar
d1p5va1  (   7 )               faskeygVtIge-srIiYpld---aaGvmVsVkNtq-dy
d1rowa-  (   3 )                      LtAdpp-aCtVpAa---gvsstHkLvNgg-ae
d1wica-  (   1 )    gssgssgkkplsvfkGpllHispaeelyFgsiesgekktlivltnvt-kn
d2j2za1  (   1 )                     aVsLdr-trAvFdGs---eksmtLdIsNdnkql
d3bwuc1  (   1 )                     gVaLga-trviYpag---qkqeqLaVtNndens
                                       bb     bbbb        bbbbbbb     

                             60        70        80        90        100 
d1grwa-  (  40 )    rIGYgIkttnm-------krLgVdppcgVLdpkeavlLaVsCdafafgqe
d1p5va1  (  41 )    pvlIqSriy---------dpFvVtpplfrLdakqqnsLrIaqa--ggvfp
d1rowa-  (  30 )    kiVFkIkSsnn-------neYriapvfgfVdpsgskdVvItRtaga----
d1wica-  (  50 )    ivAFkvrttap-------ekYrvkpsnsSCdpgasidiivsph---gglt
d2j2za1  (  30 )    pylAqAwIEnenqekiitGpViAtppvqrLepgaksmVrLsttpdisklp
d3bwuc1  (  30 )    tylIqSwVenadgvk--dgrFiVtpplfaMkgkkentLrIldaT-nnqlp
                     bbbbbbb            bbbb  bbbb    bbbbbbbb        

                             110       120       130       140       150 
d1grwa-  (  83 )    --dtnnDrItVeWtntpdgaakq--frrewfqgdg--mvrrknLpIeYnp
d1p5va1  (  89 )    rdkeslkwLçVkGipk--dvg------------vfvqfainnçikLlVrP
d1rowa-  (  69 )    ---pkedkLvVhfAsApa-datd--A-qaafvava--pagtvtIpMsAta
d1wica-  (  90 )    --vsaqDrFliMAAeMeqssgtgpaelsqFwkevprnkvmehrlrChtve
d2j2za1  (  80 )    qdreslFyFNLrEipprseka------------nvlqialqtkikLfYrP
d3bwuc1  (  77 )    qdreslFwMNVkaipsmd--e------------ntlqlaiisrikLyYrP
                           bbbbbbb                         bbbbbbbbbb 

                             160   
d1grwa-                            
d1p5va1  ( 145 )    nel            
d1rowa-                            
d1wica-  ( 138 )    sskpnslmlsgpssg
d2j2za1  ( 118 )    aaiktrp        
d3bwuc1  ( 118 )    akla           
                                   

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]