PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Clathrin adaptor appendage domain
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  5
Average Size: 
Members
SCOP ID Name Source
d1kyfa1 Alpha-adaptin AP2 ear domain, N-terminal subdomain Mouse (Mus musculus) [TaxId: 10090]
d1e42a1 Beta2-adaptin AP2 ear domain, N-terminal subdomain Human (Homo sapiens) [TaxId: 9606]
d1gyva- Gamma1-adaptin domain Human (Homo sapiens) [TaxId: 9606]
d1p4ua- ADP-ribosylation factor binding protein Gga3 domain Human (Homo sapiens) [TaxId: 9606]
d1r4xa1 Coatomer gamma subunit C-terminal domain, first subdomain Human (Homo sapiens) [TaxId: 9606]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1e42a1  ( 705 )                               g--gyva-pkavwLpavkAkgLe
d1gyva-  ( 703 )                                    mi-psitAys---kngLk
d1kyfa1  ( 692 )                  gspgirlgssednfarFvck-nngvlfe---nqllq
d1p4ua-  ( 579 )                  lsLasihvplesikp--Ssa-lpvtAyd---kngFr
d1r4xa1  ( 600 )    mhhhhhhmtrqeifqeqLaavpeFrgLgpLfkSspepvaLtese--teYv
                                                         bbbb       bb

                             60        70        80        90        100 
d1e42a1  ( 725 )    IsGtFthrq-----ghiyMeMnFtNkal-qhMtdFaIqFnkNS---fGvi
d1gyva-  ( 717 )    IeFtFe--rsntnpsvTvItIqAsNste-ldMtdFvFqAaVpk----tFq
d1kyfa1  ( 724 )    iglkSefr-----qnlgrMfifYgnkts-tqFlnFtPtlicaddlqtnln
d1p4ua-  ( 609 )    IlFhFAkecPpgrpdVLVVvVsMlNmap-lpVksIvLqAaApk----sMk
d1r4xa1  ( 648 )    IrCTkHtFt-----nhMVFqFdCtNtlndqtLenVtVqMep-t---eaYe
                    bbbbbb         bbbbbbbbbb       bbbbbbbb         b

                             110       120       130       140       150 
d1e42a1  ( 766 )    pstpLaIhtpLmpn------qsidVsLpLnt-----lgpvmkmeplnnLq
d1gyva-  ( 760 )    lqelspsssvVpafn----tgtItqvIkVlnpq----------kqqLrMr
d1kyfa1  ( 768 )    lqtkpv-dptvdGg------aqvqqvvniecis----------dFteaPv
d1p4ua-  ( 654 )    vklQppsgteLspfspiqppaaItQVMLLANpl----------kekVrLr
d1r4xa1  ( 689 )    vl-yvpar-sLpyn------qpgtCyTLVAlPkedptav------aCtFs
                    b                     bbbbbbbb                  bb

                             160       170       180       190 
d1e42a1  ( 805 )    VaVkNni----------------dvfyf-scliplnV     
d1gyva-  ( 796 )    IkLtYnhk------------gsamqdlaeVnnFpp--qSwq 
d1kyfa1  ( 801 )    lniqFryg------------gtfqnvsvklPitlnk      
d1p4ua-  ( 694 )    ykLtfalg------------eqlstevgevdqFppveqWgnl
d1r4xa1  ( 726 )    CmMkFtVkdcdpttgetddeGyedeyvLedLeVtvad     
                    bbbbbbb              bbbbbbb              

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]