PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  CBD9-like
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  3
Average Size: 
Members
SCOP ID Name Source
d1pl3a- Cytochrome domain of cellobiose dehydrogenase Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1i8aa- Xylanase 10A Thermotoga maritima [TaxId: 2336]
d1ulva3 Glucodextranase, domain C Arthrobacter globiformis [TaxId: 1665]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1i8aa-  (   0 )    mvAtAkygtPvIdGeideiWnt-TeeieTkavAmgsl------------d
d1pl3a-  (   2 )       sAsqftDp-------ttgfqFtGitdp-------------------v
d1ulva3  ( 776 )                          riGalsDpagddnGpgtYryPtnsaYvp
                                             bbb                      

                             60        70        80        90        100 
d1i8aa-  (  37 )    knAtAkVrVLWde--------nyLYVLAiVkDpvlnkdnsnpweqDSVEI
d1pl3a-  (  23 )    h--dVtYGFVFpplatsgaqsteFIGEVvApi-----------aSkWIgI
d1ulva3  ( 804 )    gAFDLtgVdVydag-------ddyaFvatIag-eVtnpwggqaISHQRVN
                        bbbbbb             bbbbbbb                bbbb

                             110       120       130       140       150 
d1i8aa-  (  79 )    FIDEnnh-----ktg-----yYedDDAQFrVNym---neqtfg-------
d1pl3a-  (  60 )    a--LgGa-----hnn----------DLlLVAWangnqIvsstRwAtgyvq
d1ulva3  ( 846 )    IYLGkGeggatpGlpGTnInLehaWdsVIVTDGrfd--gAGVyapdg---
                    b                          bbbb         bb        

                             160       170       180       190       200 
d1i8aa-  ( 109 )    -tgGsparFkTaV---kliegGYIVEAAIkWkti-----kPtpntvIGFN
d1pl3a-  (  93 )    ptaYtgtAtLttlpettinsthWkWVFrÇqgÇTeWnnggGidVtsqgvLa
d1ulva3  ( 891 )    -trts---aVsLl---avpear-qIvTrVpkaaLg----gldPa-tArMS
                              bb    bb     bbbbbbb                 bbb

                             210       220       230       240       250 
d1i8aa-  ( 150 )    IQVNdAn----ekGqrvGiISwsDp--------tnnSw------------
d1pl3a-  ( 143 )    waFSnvaVddpsdpqStFs-------------------------------
d1ulva3  ( 928 )    VAMFGNAesgeGignVrPVYdgayWeagdpawIkewrFGGGagvfdgtip
                    bbbb                                              

                             260       270       280       290 
d1i8aa-  ( 176 )    ---rdPskFgnLrLik                           
d1pl3a-  ( 162 )    -----ehtdfgfFgIdYstAhsanYqnyln             
d1ulva3  ( 978 )    srDtdtdDPNALDVLvgegqtqaavLdwragspVvVPMlgLqp
                                bb                             

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]