PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Cu,Zn superoxide dismutase-like
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  4
Average Size: 
Members
SCOP ID Name Source
d2c9va1 Cu,Zn superoxide dismutase, SOD Human (Homo sapiens) [TaxId: 9606]
d1oala- Cu,Zn superoxide dismutase, SOD Photobacterium leiognathi [TaxId: 553611]
d1pzsa- Cu,Zn superoxide dismutase, SOD Mycobacterium tuberculosis [TaxId: 1773]
d1ej8a- Copper chaperone for superoxide dismutase, C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1ej8a-  (  78 )     ssAvAiLetfqkYtidqkkdtavRglArIvqvgen-kTlFdItVn--gV
d1oala-  (   1 )     qdltVkMtdlqt--------gkpVgtIeLsqn-ky-gVvFiPeLa---d
d1pzsa-  (   1 )     qsltStLtap-d--------gtkVAtAkFefan--gyAtVtIaTtgvgk
d2c9va1  (   1 )    atkAvCvLkgd----------gpVqgiInFeQkesngpVkVwgsIk---g
                      bbbbbbb              bbbbbbbbbb    bbbbbbbb     

                             60        70        80        90        100 
d1ej8a-  ( 124 )    peagnYhAsIhekgdvs-----------kgvesTgkvwhkFd--------
d1oala-  (  37 )    LtpgeHGFHIHqngsças-sekdg--kvvlGGaAggHydpehtnkHgfPw
d1pzsa-  (  39 )    LtpgfHGLHIHqvGkçepnsvaptggapgnFlsAGgHyhvpght------
d2c9va1  (  38 )    LteglHGFHVHefGdnt-----------agçtsAgpHFnplsr-kHGgpk
                       bbb bbbb                    333                

                             110       120       130       140       150 
d1ej8a-  ( 155 )    ---------epIeCfnesdlgknLysgktfLsAp-lPTw---qLi---gr
d1oala-  (  84 )    tddNhkGDLpaLfVsa-------nglAtnpvlAprLtLk---eLk---gh
d1pzsa-  (  83 )    -gtpAsGdLasLqVrg-------dGsAmlvtttdaFtmd---dLlsgakT
d2c9va1  (  76 )    deeRhVGDLGnVtAdk-------dgvAdVsiedsvIsLsgdhcIi---gr
                               bbb             bbbbbb                 

                             160       170       180       190       200 
d1ej8a-  ( 189 )    SFVIsks-Ln----hpenepssvk---------------dYsFLgvIar 
d1oala-  ( 121 )    AIMIHaggDnhsdm-------------pk----alGgGgarvAÇgvIq  
d1pzsa-  ( 122 )    AIIIHagaDnfAnipperyvqvngtpGpdetTlttgdAgkrvAÇGvIgs-
d2c9va1  ( 116 )    TLVVHekaDdlGkg-------------gneeStktGnAgsrlAÇgvIgia
                    bbbbb                                   bbbbbb    

                     
d1ej8a-              
d1oala-              
d1pzsa-  ( 171 )    g
d2c9va1  ( 153 )    q
                     

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]