PASS2
  • Superfamily Details
  • Alignment & HMM
  • Jmol View
  • Features

Superfamily Details

Superfamily summary
Superfamily Name:  Actinoxanthin-like
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  2
Average Size: 
Members
SCOP ID Name Source
d1noaa- Neocarzinostatin Streptomyces carzinostaticus [TaxId: 1897]
d1akpa- Kedarcidin Actinomycete ATCC 53650, strain L585-6 [TaxId: 38989]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1akpa-  (   1 )    asaavsvspatgladgatvtvsasgfatstsatAlqçAiladgrgnva
d1noaa-  (   1 )    aaptAtVtpssgLsdgtvVkVaGagLqagtaYdVgQçAwvdtgvlAçNpa
                       bbbb             bbbb           bbbb      bb   

                             60        70        80        90        100 
d1akpa-  (  51 )    efhdfslsg-gegttsvvvrrsftGyvmpdgpevgavdçdtapggÇeivv
d1noaa-  (  51 )    dfssvtAdangsastsLtVrrsfeGflf-dgtrwgtVdÇtta--aÇqVgL
                                         bbbb         bbbb       bbb  

                             110    
d1akpa-  ( 100 )    gGntgey-gnaaisfg
d1noaa-  (  98 )    sdaagngPeGvaIsFn
                              bb    

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]