PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Cadherin-like
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  7
Average Size: 
Members
SCOP ID Name Source
d1op4a- N-cadherin (neural) Mouse (Mus musculus) [TaxId: 10090]
d1edha2 E-cadherin (epithelial) Mouse (Mus musculus) [TaxId: 10090]
d2omzb1 E-cadherin (epithelial) Human (Homo sapiens) [TaxId: 9606]
d1l3wa3 C-cadherin ectodomain African clawed frog (Xenopus laevis) [TaxId: 8355]
d1l3wa4 C-cadherin ectodomain African clawed frog (Xenopus laevis) [TaxId: 8355]
d1l3wa5 C-cadherin ectodomain African clawed frog (Xenopus laevis) [TaxId: 8355]
d1u2ca1 Dystroglycan, N-terminal domain Mouse (Mus musculus) [TaxId: 10090]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1edha2  ( 102 )          ndnrPeFtqevFegsvaegav--pgtsVmkVsAtDadddvntyn
d1l3wa3  ( 214 )         aNdnaPiFdpktytalVpen-e--igfeVqrLsVtDldmpg-tpa
d1l3wa4  ( 327 )           neaPffvpavsrvdvsedls--rgekIislvAqDpdk---qqi
d1l3wa5  ( 434 )          ndnGPvPsp--rvFtMÇdq-----npepqvLtIsDadip--pnt
d1op4a-  (  24 )    easgeialçktGFpedvysavlpkdvhe----gqpllnvkFsnnr--k
d1u2ca1  (  58 )    a-----vptvvgip--dgtavvg---------rsfrvsIpTdlIass--g
d2omzb1  (  -2 )              plgsWvippIsCpenekgpfpknlvqIkS--nkdke----
                                     b b              bb              

                             60        70        80        90        100 
d1edha2  ( 144 )    AaiAytivsQdpelphknMFtVnrd----tGvIsVltsgLdresyp----
d1l3wa3  ( 255 )    wqAvYkirvn--eg---gfFnIttdpesnqGiLtTakg-LdFelrk----
d1l3wa4  ( 365 )    Qklsyfigndp-----arwltvnkd----nGiVtgngn-ldreseyvknn
d1l3wa5  ( 469 )    ypykVsLshgsd-----ltWkaeldskgtsMlLsptqq-lk-------kg
d1op4a-  (  67 )    rkvqYes-------sEpAdFkvde-----dGtvyAvrSfplta------e
d1u2ca1  (  90 )    eiikVsaa--gkealps-WLhwdp----hshiLeglPldtdk--------
d2omzb1  (  32 )    gkVfYsItgqGAdtppvgvFiIere----tGwLkVtep-Ldreria----
                       bbb             bbb         bbbb               

                             110       120       130       140       150 
d1edha2  ( 186 )    tYtLvVqAAD----lqge---glsttakAvItVkd               
d1l3wa3  ( 295 )    qYvlqItVeN----aepfsvplptstAtVtVtVedv              
d1l3wa4  ( 405 )    tYtViMlVtD----d---gvsvgtgtgtLiLhVldv              
d1l3wa5  ( 506 )    dysIyVlLsD----aq-----nnpqltvVnAtVçsçegkaikçq      
d1op4a-  (  99 )    qakFliyAqDket--------qekwqvavnlsreptlteepmkepheiEe
d1u2ca1  ( 125 )    -gvhyIsVsAarlgangshvpqtssvFsIeVypedhn             
d2omzb1  (  73 )    tytLfShAvs----sng---navEdpmeilItVtd               
                     bbbbbbbb                 bbbbbb                  

                             160       
d1edha2                                
d1l3wa3                                
d1l3wa4                                
d1l3wa5                                
d1op4a-  ( 141 )    ivfprqlakhsgalqrqkr
d1u2ca1                                
d2omzb1                                
                                       

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]