PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Transglutaminase, two C-terminal domains
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  8
Average Size: 
Members
SCOP ID Name Source
d1ex0a2 Transglutaminase, two C-terminal domains Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1ex0a3 Transglutaminase, two C-terminal domains Human (Homo sapiens), blood isozyme [TaxId: 9606]
d2q3za2 Transglutaminase, two C-terminal domains Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d2q3za3 Transglutaminase, two C-terminal domains Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d1vjja2 Transglutaminase, two C-terminal domains Human (Homo sapiens), TGase E3 [TaxId: 9606]
d1vjja3 Transglutaminase, two C-terminal domains Human (Homo sapiens), TGase E3 [TaxId: 9606]
d1g0da2 Transglutaminase, two C-terminal domains Red sea bream (Chrysophrys major) [TaxId: 143350]
d1g0da3 Transglutaminase, two C-terminal domains Red sea bream (Chrysophrys major) [TaxId: 143350]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1ex0a2  ( 516 )     snVdMdFeVe-navlgkdFkLsItFrNnshnrYtItAyLsAnITfytgv
d1ex0a3  ( 628 )     tipeIiIkvrgtqvvgsdMtVTVqFtNplketLrnVwVhLdGp------
d1g0da2  ( 472 )      rlqLsIkha-qpvfgtdfdViVeVkNeggrdahaqLtMlAMAVtynsl
d1g0da3  ( 584 )      tpeLlVqVpgkAvvwepltAyVsFtNplpvpLkgGvFtLeGa------
d1vjja2  ( 479 )    epsIiGkLkvagmlavgkeVnLvLlLkNlsrdtktVtVnMtAwTIiyngt
d1vjja3  ( 594 )       ptLtLevlneArVrkpVnVqMlFsNpldepVrdCvLmVegs------
d2q3za2  ( 472 )      gmaMrIrVgqsmnmgsdFdVfAhItNntaeeyvCrLlLcArTVsyngi
d2q3za3  ( 586 )      npeIkIrilgepkqkrkLvAeVSLqNplpvaLegCtFtVega------
                          bbb          bbbbbbbb      bb bbbbbbb       

                             60        70        80        90        100 
d1ex0a2  ( 564 )    pkaeFkketf-dV-tLeplsfkkeavlIqageYmgqlleqasLhFfVtAr
d1ex0a3  ( 671 )    -GVt-rpmkkmfr-eIrpnstvqWeevCrPw-----vs--ghrkLiAsMs
d1g0da2  ( 519 )    rrgecqrkti-sV-tVpahkahkevMrLhyddYvrcVsehhlIrVkAlLd
d1g0da3  ( 626 )    -GLl-satqihvngavapsgkVsvklsfsPm-----rt--gvrkLlVdFd
d1vjja2  ( 529 )    lvheVwkdsa-tm-sLdpeeeaehpIkIsyaqYeryLksdnmIrItAvCk
d1vjja3  ( 635 )    -gLllgnlkidVp-tlgpkersrvrfdIlPs-----rs--gtkqLlAdFs
d2q3za2  ( 520 )    lgpeCgtkyllnL-tLepfseksvplcIlyekYrdcLtesnlIkVrAlLv
d2q3za3  ( 628 )    -gLteeqktveipdpVeageevkvrmdLvPl-----hm--glhkLvVnFe
                          bbbb b  bb    bbbbbbbb             bbbbbbbbb

                             110       
d1ex0a2  ( 612 )    InetrdvlakqkstvL   
d1ex0a3  ( 711 )    Sd-slrhVygeldVqIqr 
d1g0da2  ( 567 )    ap---gpimtvanIpLs  
d1g0da3  ( 667 )    Sd-rlkdVkgvttvvVhkk
d1vjja2  ( 577 )    Vp-desevvVerdIiLdn 
d1vjja3  ( 676 )    Cn-kfpaikamlsIdVa-e
d2q3za2  ( 569 )    epvinsyllaerdLyLe  
d2q3za3  ( 670 )    Sd-klkaVkgfrnvi    
                           bbbbbbbb    

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]