PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  beta-Galactosidase/glucuronidase domain
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  11
Average Size: 
Members
SCOP ID Name Source
d1jz8a1 beta-Galactosidase, domains 2 and 4 Escherichia coli [TaxId: 562]
d1jz8a2 beta-Galactosidase, domains 2 and 4 Escherichia coli [TaxId: 562]
d1yq2a1 beta-Galactosidase, domains 2 and 4 Arthrobacter sp. c2-2 [TaxId: 192168]
d1yq2a2 beta-Galactosidase, domains 2 and 4 Arthrobacter sp. c2-2 [TaxId: 192168]
d1bhga1 beta-Glucuronidase Human (Homo sapiens) [TaxId: 9606]
d2vzsa1 Exochitosanase CsxA, domains 2, 4 and 5 Amycolatopsis orientalis [TaxId: 31958]
d2vzsa2 Exochitosanase CsxA, domains 2, 4 and 5 Amycolatopsis orientalis [TaxId: 31958]
d2vzsa3 Exochitosanase CsxA, domains 2, 4 and 5 Amycolatopsis orientalis [TaxId: 31958]
d2je8a1 Beta-mannosidase, domains 2, 4 and 5 Bacteroides thetaiotaomicron [TaxId: 818]
d2je8a2 Beta-mannosidase, domains 2, 4 and 5 Bacteroides thetaiotaomicron [TaxId: 818]
d2je8a3 Beta-mannosidase, domains 2, 4 and 5 Bacteroides thetaiotaomicron [TaxId: 818]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1bhga1  ( 226 )                            TyIddItvtt-sve--q--dSGlVnY
d1jz8a1  ( 220 )                            tqIsdfhvaT-rfn--ddfsrAvLeA
d1jz8a2  ( 626 )                              fFqFrlsg-------------qtI
d1yq2a1  ( 610 )                              pIrLgLslp---ag-----gkPtL
d1yq2a2  ( 220 )                            ggItdAwLrt-gwsarsgaGtGtIdP
d2je8a1  ( 220 )                           iAtIsdYyVrqlslt----denArLsN
d2je8a2  ( 784 )                        lppTsVsyqmkqtd-----------gkCeL
d2je8a3  ( 679 )                               vlInpiqq---n------dsLsV
d2vzsa1  ( 226 )                           aVaLrsAhViq-klns--aldhAdLtV
d2vzsa2  ( 778 )    gsdwyytpqsafadlsglnnlgqSaVgAtAnsvag------adgtTtTtV
d2vzsa3  ( 675 )                              plhIqYshd-----------nrsV
                                               bbbbbb               bb

                             60        70        80        90        100 
d1bhga1  ( 247 )    qIsVkgsn--l---fkLeVrLldaenkvv-angtgt--------------
d1jz8a1  ( 243 )    eVqMcgelrdy---LrVtVsLwqge-tqv-asgtapFggeiiderggyad
d1jz8a2  ( 637 )    eVtSeyl-frhSdnElLhWmVaLd-gkpl-asgevpLd-------Vapq-
d1yq2a1  ( 626 )    aVaNlrh-tadAsdVVLrwrVehd-gava-asgevaAeG--sdgpLrag-
d1yq2a2  ( 245 )    eItAd---atA---fpVtLsV--pel--g-vnvtWks----------aee
d2je8a1  ( 243 )    eLiVnQivpqki-pAeVrVnVsln-gttv-tevkqqvtLqp---gin---
d2je8a2  ( 803 )    tLfSs----mlAkdIfIeT------plqgArysdnffdLlpg--------
d2je8a3  ( 693 )    yLiSdrl--dtmeqMtLeMkVvDfdgktlgkkiqvhsl------eVpan-
d2vzsa1  ( 250 )    kAdVrNdsanav-qTtVagtVA---g----kpisqtvsLaak--erk---
d2vzsa2  ( 822 )    tLkNtsggrlpAfyVdSkVVdsagkpVlpvewndnavslwpg--------
d2vzsa3  ( 688 )    vViNqts--navsgLtAtTkLynldgtek-ysntktgl------sVgalg
                    bbbb          bbbbbbb         bbbbb               

                             110       120       130       140       150 
d1bhga1  ( 277 )    ---qgq-LkVpgvslwwpylmherpaylYsLeVqLtAqtsl-----gpvs
d1jz8a1  ( 288 )    -rVtLr-LnvenPklws-ae----ipnlYrAvVeLht--ad-----gtli
d1jz8a2  ( 676 )    gkqlIeLpelp--qp-------esa-gqlwLtVrVvQpnatawseaghis
d1yq2a1  ( 670 )    esatiaLpaMp--aa-------pl--geTwLtVeAVLrdatgwapaghpl
d1yq2a2  ( 274 )    ---vap-laLenVepws-ae----vprlYeAsVsSa-------------a
d2je8a1  ( 284 )    -hItLp-AeVtnPvrwmpngwg--tptlYdFsAqIACg--------driv
d2je8a2  ( 835 )    erkkVi-Itsp--rIkk----------geelpVnIkH--irety-----k
d2je8a3  ( 734 )    tskCvyrakLdgwLt-------pedCrrSfLkLiLkdk-------sghqv
d2vzsa1  ( 287 )    -tVtFplvgldrPnvwwpagmg--gqhrydLdLtAsvg--------gtps
d2vzsa2  ( 864 )    etttLt-AkYrtadLk-----------gskpsVrIsG--wNT-g-----t
d2vzsa3  ( 729 )    akatAvtVpavsgLs-------t----tylAkNvLtds-------sgkev
                     bbbbb                      bbbbbbbb            bb

                             160      
d1bhga1  ( 318 )    dfytlpVgIrt       
d1jz8a1  ( 324 )    eaeacdVgFr        
d1jz8a2  ( 716 )    awqqwrlae---nlsvtl
d1yq2a1  ( 709 )    gavqldLsa---pa--vp
d1yq2a2  ( 302 )    esisvrLgFrt       
d2je8a1  ( 322 )    aeqshrigL         
d2je8a2                               
d2je8a3  ( 770 )    aesvhfFrktkdlq    
d2vzsa1  ( 326 )    daakskfgVr        
d2vzsa2  ( 894 )    qtvpA             
d2vzsa3  ( 761 )    srnvywls-tkadtlnwg
                    bbbbbb            

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]