PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Fe,Mn superoxide dismutase (SOD), N-terminal domain
Class Name:  All alpha proteins
Fold Name:  Long alpha-hairpin
Number of Members:  4
Average Size: 
Members
SCOP ID Name Source
d1my6a1 Fe superoxide dismutase (FeSOD) Thermosynechococcus elongatus [TaxId: 146786]
d1coja1 Fe superoxide dismutase (FeSOD) Aquifex pyrophilus [TaxId: 2714]
d1wb8a1 Fe superoxide dismutase (FeSOD) Archaeon Sulfolobus solfataricus [TaxId: 2287]
d1ix9a1 Mn superoxide dismutase (MnSOD) Escherichia coli [TaxId: 562]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1coja1  (   2 )      vhklepkdhlkPq-nLe--gisneqIephFeahYkgyVakYneiqekl
d1ix9a1  (   1 )        sytlpsLpyaydaLep-hfdkqtMeihhtkhHqtyVnnAnaaLesl
d1my6a1  (   1 )        afvqepLpfdpgaLepygmsaktLefhygkhHkgyVdnLnklTqdt
d1wb8a1  (   4 )    iqfkkyelppLpykidalep-yiskdiIdvhynghHkgyVngAnsllerl
                                            aaaaaaaaa aaaaaaaaaaaaa   

                             60        70        80        90       
d1coja1  (  47 )    ad--qnfAdrskanq--nyseyrelkveetfnymgVvlhelyFgmltp
d1ix9a1  (  46 )    pefa--nlpVeeLitkldqLp-adkktvLrnnAgghAnhslfWkglkk
d1my6a1  (  47 )    elad---ksledVirtTygd--aa-kvgifnnAaqVwnhtffWnslkp
d1wb8a1  (  53 )    ekvvkgdlqt-------gqydiqgIirgltfninghklhalyWenma 
                    a                        aaaaaaaaaaaaaaaaaaa    

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]