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Superfamily Details

Superfamily summary
Superfamily Name:  Chaperone J-domain
Class Name:  All alpha proteins
Fold Name:  Long alpha-hairpin
Number of Members:  7
Average Size: 
Members
SCOP ID Name Source
d1fpoa1 HSC20 (HSCB), N-terminal (J) domain Escherichia coli [TaxId: 562]
d1xbla- DnaJ chaperone, N-terminal (J) domain Escherichia coli [TaxId: 562]
d1nz6a- Auxilin J-domain Cow (Bos taurus) [TaxId: 9913]
d1iura- Hypothetical protein KIAA0730 Human (Homo sapiens) [TaxId: 9606]
d1fafa- Large T antigen, the N-terminal J domain Murine polyomavirus [TaxId: 10634]
d1gh6a- Large T antigen, the N-terminal J domain Simian virus 40, Sv40 [TaxId: 10633]
d1wjza- CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) Mouse (Mus musculus) [TaxId: 10090]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1fafa-  (   1 )         mdrvlsradkerllellklprqlwgdfgrMqqaykqqslllhpdk
d1fpoa1  (   1 )                   mdyFtlFglparyqLdtqaLslrfqdlqrqyhpdk
d1gh6a-  (   4 )            shmreeSlqLMdlLglersawgniplMrkaYlkkCkeFhpdk
d1iura-  (   1 )    mhhhhhhlvprgsilkevtsvveqAw--klpeserkkiirrlylkwhpdk
d1nz6a-  (   1 )    dpeklkilewiegkernIraLLsta--dlvtpeqVkkvyrkavlvvhpdk
d1wjza-  (   1 )    gssgssgmaleqtlkkdWYsilgAdp--sanmsdlkqkyqklillyhpdk
d1xbla-  (   2 )                 akqdyyeilgvs--ktaeereirkAykrlamkyhpdr
                                     aaaa          aaaaaaaaaaaaaa     

                             60        70        80        90        100 
d1fafa-  (  46 )    g----------gshalmqelnslWgtfkt--evynlrmnlggtgfq    
d1fpoa1  (  36 )    f-asgsqaeqlaAvqqsatInqAwqtLrhplmRaeyllslhg        
d1gh6a-  (  46 )    g----------gdeekMkkMNtlYkkmEd--gvky--------ahqpdfg
d1iura-  (  49 )    np-----enhdiAnevfkhlqnEinrlek--qafld--------------
d1nz6a-  (  66 )    At----gqpyeqyAkif-eLndAwseFen---qgqkply           
d1wjza-  (  49 )    qsadvpagtmeeCmqkfieidqAwkilGneetkkkYdlqrsgp-------
d1xbla-  (  37 )    nq----g--dkeaeakfkeikeAyevltdsqkraAydqyghaAfeq    
                               aaaaaaaaaaaaaaaaa   aaa                

                             110       120       130       140 
d1fafa-                                                       
d1fpoa1                                                       
d1gh6a-  (  76 )    gfwdateIptYgtdeWeqWwnafneenlfcseempssddeat
d1iura-  (  78 )    -------------------------------qnadrasrrtf
d1nz6a-                                                       
d1wjza-  (  92 )    -------------------------------ssg        
d1xbla-                                                       
                                                              

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]