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Superfamily Details

Superfamily summary
Superfamily Name:  Ribosomal protein L29 (L29p)
Class Name:  All alpha proteins
Fold Name:  Long alpha-hairpin
Number of Members:  3
Average Size: 
Members
SCOP ID Name Source
d1vqov1 Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
d2j0121 Ribosomal protein L29 (L29p) Thermus thermophilus [TaxId: 274]
d2gycw1 Ribosomal protein L29 (L29p) Escherichia coli [TaxId: 562]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1vqov1  (   1 )    tvlhvqeIrdmtpaeReaelddlktellnaravqaaggapenpgrikeLr
d2gycw1  (   1 )      mkakeLreksveeLntellnllreqfnlr-mqaasgqlqqshllkqvr
d2j0121  (  12 )                 earklspveleklVrekkrelmelrfqasigqlsqnh
                                      aaaaaaaaaaa                     

                             60    
d1vqov1  (  51 )    kaiarIktIqgeegd
d2gycw1  (  48 )    rdvarVktLlnek  
d2j0121  (  49 )    kirdlkrqia--rll
                                   

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]