PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  GreA transcript cleavage protein, N-terminal domain
Class Name:  All alpha proteins
Fold Name:  Long alpha-hairpin
Number of Members:  2
Average Size: 
Members
SCOP ID Name Source
d1grja1 GreA transcript cleavage protein, N-terminal domain Escherichia coli [TaxId: 562]
d2f23a1 GreA transcript cleavage protein, N-terminal domain Thermus thermophilus [TaxId: 274]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1grja1  (   2 )    qaipmtlrgAeklreeldflksvrrpeIiaaIaeArehgdlkenaeyhaa
d2f23a1  (   3 )    revkltkagyerlmqqLerEre-rlqeatkilqelmessddyddsgleaa
                      bbb aaaaaaaaaaaaaaaa aaaaaaaaaaaaa        aaaaaa

                             60        70       
d1grja1  (  52 )    reqqgfcegrIkdIeaklsnAqvidvtk
d2f23a1  (  52 )    kqekarIearIdslediLsrAvilee  
                    aaaaaaaaaaaaaaaaaaaabbb     

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

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Response Logs

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]