PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  alpha-helical ferredoxin
Class Name:  All alpha proteins
Fold Name:  Globin-like
Number of Members:  3
Average Size: 
Members
SCOP ID Name Source
d1nekb1 Succinate dehydogenase Escherichia coli [TaxId: 562]
d1kf6b1 Fumarate reductase Escherichia coli [TaxId: 562]
d2bs2b1 Fumarate reductase Wolinella succinogenes [TaxId: 844]
Outliers
SCOP ID Name Source
d1gtea1 Dihydropyrimidine dehydrogenase, N-terminal domain Pig (Sus scrofa) [TaxId: 9823]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1kf6b1  ( 106 )    m-thFieSleaIkpyiigns--rtadqgtniQtpaqmakYhqfsgcincG
d1nekb1  ( 107 )    m-gqfyaQyekIkpyllnngqnppa--rehlqmpeqrekLdglyecilcA
d2bs2b1  ( 107 )    tgnwFngMsqrVeswihaqk-ehdiskleeriepevaqevfeLdrciecg
                      aaaaaaaaa                      aaaaa            

                             60        70        80        90        100 
d1kf6b1  ( 153 )    lcyaAcpqfglnp-eFiGPAAITlAHryneDsrDhG-kkeRMaqLnsqnG
d1nekb1  ( 154 )    ccStscpsfwwnpdkFIGPAGLLaAyrfLiDsrDte-tdsrLdglsdafs
d2bs2b1  ( 156 )    cciaacgTkimre-dFVGAAGLNrVVrfMiDphDertdedYyelIGdddG
                    aaaa  aaaaa       aaaaaaaaaaa         aaaaa       

                             110       120       130       140 
d1kf6b1  ( 201 )    VwsctfvgycsevcpkhVdPaaAIqqgkveSskdfliatlkpr
d1nekb1  ( 203 )    VfrchsimncvsvcpkglnPtrAIghIksmLlqrna       
d2bs2b1  ( 205 )    VfgcmtllachdvcpknLpLqskiayLrrkMvsvn        
                            aaaaa      aaaaaaaaaaaa            

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]