PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Globin-like
Class Name:  All alpha proteins
Fold Name:  Globin-like
Number of Members:  37
Average Size: 
Members
SCOP ID Name Source
d1dlwa- Protozoan/bacterial hemoglobin Ciliate (Paramecium caudatum) [TaxId: 5885]
d1s69a- Protozoan/bacterial hemoglobin Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]
d1idra- Protozoan/bacterial hemoglobin Mycobacterium tuberculosis, HbN [TaxId: 1773]
d1ngka- Protozoan/bacterial hemoglobin Mycobacterium tuberculosis, HbO [TaxId: 1773]
d1ux8a- Protozoan/bacterial hemoglobin Bacillus subtilis [TaxId: 1423]
d1kr7a- Nerve tissue mini-hemoglobin (neural globin) Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]
d3sdha- Hemoglobin I Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d1b0ba- Hemoglobin I Clam (Lucina pectinata) [TaxId: 29163]
d1h97a- Trematode hemoglobin/myoglobin Paramphistomum epiclitum [TaxId: 54403]
d1jl7a- Glycera globin Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]
d1a6ma- Myoglobin Sperm whale (Physeter catodon) [TaxId: 9755]
d1mbaa- Myoglobin Slug sea hare (Aplysia limacina) [TaxId: 6502]
d1ecda- Erythrocruorin Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]
d2gdma- Leghemoglobin Yellow lupin (Lupinus luteus) [TaxId: 3873]
d1cg5a- Hemoglobin, alpha-chain Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]
d3d1ka1 Hemoglobin, alpha-chain Antarctic fish (Trematomus newnesi) [TaxId: 35730]
d1cg5b- Hemoglobin, beta-chain Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]
d3d1kb1 Hemoglobin, beta-chain Antarctic fish (Trematomus newnesi) [TaxId: 35730]
d1gcvb- Hemoglobin, beta-chain Houndshark (Mustelus griseus) [TaxId: 89020]
d1it2a- Hagfish hemoglobin Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]
d1asha- Ascaris hemoglobin, domain 1 Pig roundworm (Ascaris suum) [TaxId: 6253]
d1itha- Hemoglobin Innkeeper worm (Urechis caupo) [TaxId: 6431]
d1hlba- Hemoglobin, different isoforms Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]
d1q1fa- Neuroglobin Mouse (Mus musculus) [TaxId: 10090]
d1cqxa1 Flavohemoglobin, N-terminal domain Alcaligenes eutrophus [TaxId: 106590]
d2qfka1 Dehaloperoxidase Amphitrite ornata [TaxId: 129555]
d1or4a- Heme-based aerotactic transducer HemAT, sensor domain Bacillus subtilis [TaxId: 1423]
d1urva- Cytoglobin Human (Homo sapiens) [TaxId: 9606]
d1tu9a- Hypothetical protein PA3967 Pseudomonas aeruginosa [TaxId: 287]
d1x9fa- Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A) Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d1x9fb- Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B) Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d1x9fc- Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d1jboa- Phycocyanin alpha subunit Synechococcus elongatus [TaxId: 32046]
d1alla- Allophycocyanin alpha subunit Spirulina platensis [TaxId: 118562]
d1allb- Allophycocyanin beta subunit Spirulina platensis [TaxId: 118562]
d1b8da- Phycoerythrin alpha subunit Red alga (Griffithsia monilis) [TaxId: 42003]
d1xg0c- Phycoerythrin beta subunit Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1a6ma-  (   1 )                                      vLsegeWqlVlhVWak
d1alla-  (   3 )      sivtkSivnAdaea-ryls---pgeldriks---fvtsgerrvrIaet
d1allb-  (   1 )    mqdaitsvinssdvqg-kyld---asaiqklka---yfatgelrvrAatt
d1asha-  (   0 )                                        anktrelCmksLeh
d1b0ba-  (   2 )                                       lsaaqkdnVksSWak
d1b8da-  (   1 )    mksvitttisaadaag-rfps---ssdlesiqg---niqraaarleAAqk
d1cg5a-  (   1 )                                      vLssqnkkaIeelGnl
d1cg5b-  (   1 )                                     vkLsedqehyIkgVwkd
d1cqxa1  (   1 )                                      mLtqktkdiVkatApv
d1dlwa-  (   1 )                                                 slfeq
d1ecda-  (   1 )                                       LsadqistVqasFdk
d1gcvb-  (   1 )                                     vhWtqeerdeIsktFqg
d1h97a-  (   1 )                                      tLtkheqdiLlkeLgp
d1hlba-  (   1 )                            ggtlaiqaqgdLtlaqkkiVrkTWhq
d1idra-  (   2 )                                     gllsrlrkrepisiydk
d1it2a-  (   1 )                             pIidqgplptLtdgdkkaInkiWpk
d1itha-  (   1 )                                      gLtaaqikaIqdhWfl
d1jboa-  (   1 )    mktpiteaiaaAdtqg-rfls---ntelqavdg---rfkravaSmeAAra
d1jl7a-  (   1 )                                      gLsaaqrqvVastwkd
d1kr7a-  (   0 )                                                      
d1mbaa-  (   1 )                                      sLsaaeadlAgkSWap
d1ngka-  (   3 )                                                ksfyda
d1or4a-  (  10 )    etayFsdsngqqk--nriqLtnkhadvkkqLkmvrLgdaeLyvLeqLqpl
d1q1fa-  (   3 )                                         rpeSelIrqSWrv
d1s69a-  (   2 )                                                stlyek
d1tu9a-  (   2 )                                          naadrVmqSygr
d1urva-  (  18 )                                      eLseaerkaVqaMWar
d1ux8a-  (   6 )                                                napyea
d1x9fa-  (   5 )                                     dcçsyedrreIrhIWdd
d1x9fb-  (   1 )                                    kkqÇgvleglkVksEWgr
d1x9fc-  (   3 )                                   hehcçseedhriVqkQWdi
d1xg0c-  (   3 )       dafsrvvtads----kaayvggadlqalkk---fiseGnkRldSvns
d2gdma-  (   1 )                                     gaLtesQAalVksSwee
d2qfka1  (   1 )                                              gfkqDIat
d3d1ka1  (   1 )                                      slsdkdkaaVraLwsk
d3d1kb1  (   1 )                                     veWtdkersiIsdIFsh
d3sdha-  (   2 )                               svydaAaqLtadvkkdLrdSWkv
                                                         aaaaaaaaaaaaa

                             60        70        80        90        100 
d1a6ma-  (  17 )    Vea------dvagHGqdILIrLFkshpeTlekfdrFk-hLkteaeMkase
d1alla-  (  44 )    Mtg------arerIikqAGdqLfgkrpdVvsp----------ggnaygad
d1allb-  (  44 )    Isa------naanIVkeAVaksLly-sdvtrp----------ggnMyttr
d1asha-  (  14 )    Akvdtsn--eArqdGIdLYkhmFenypplrkyfksre-ey-taedVqndp
d1b0ba-  (  17 )    Asa------aWgtAGpeFFmaLFdahddvfakfs-glFsgaakgtVkntp
d1b8da-  (  44 )    Lsg------nheavvkeAGdaCFakysyLk-n--------ag-eaGdspe
d1cg5a-  (  17 )    Ika------nAeawGAdALarlFelhpqTktyfskfs-gf-----eacne
d1cg5b-  (  18 )    V--------dhkqiTAkALerVFvvypwTtrlfskLq-g----lfsandi
d1cqxa1  (  17 )    lAe------hgydIikcFyqrMfeahpeLknvfnma------------hq
d1dlwa-  (   6 )    Lg----gqaaVqavTaqfyanIqa-datVatffng--------------i
d1ecda-  (  16 )    Vkg----------dpvgILyaVFkadpsimakft--qFagkdlesikgta
d1gcvb-  (  18 )    t--------dMktVVtqALdrMfkvypwTnryfqkrt-----------df
d1h97a-  (  17 )    hvdt---pahiveTGlgAYhalFtahpqyIshfs--rLeghtienVmqSe
d1hlba-  (  27 )    Lmr------nktsFvtdVfirIFaydpsaqnkfp--qMagmsasqLrsSr
d1idra-  (  19 )    Ig----gheaIevVVedFYvrVla-ddqLsaffsg--------------t
d1it2a-  (  26 )    Iyk------eyeqySlnILlrFLkcfpqAqasfpkFs-tkks--nleqdp
d1itha-  (  17 )    nIkg-----clqaAAdSIffkYLtaypgdlaffhkFs-sv-plygLrsnp
d1jboa-  (  44 )    Ltn------naqsLidgAaqaVyqkfpyTttm--------qgsqyAstpe
d1jl7a-  (  17 )    Iaga--d--nGagVGkeCLskFIsahpemaavfgfs-----ga----sdp
d1kr7a-  (   0 )           mvnwaaVVddfYqelFkahpeyqnkf---gFkgvalgsLkgna
d1mbaa-  (  17 )    Vfa------nknanGldFLvalFekfpdsanffa--dFkgksvadIkasp
d1ngka-  (   9 )    Vg----gakTFdaIVsrFYaqVae-devLrrvype--------------d
d1or4a-  (  58 )    Iqe------nivnIVdafYknld-hesslmd-------------iindhs
d1q1fa-  (  16 )    Vsr------splehGtvLFarLFalepsllplfqyngrqfsspedSlssp
d1s69a-  (   8 )    Lg----gttaVdlaVdkFYerVlq-ddrIkhffad--------------v
d1tu9a-  (  14 )    Cca------st-gFfddFYrhflasspqIrakfa--------------tt
d1urva-  (  34 )    Lya------nsedVGVaILvrfFvnfpsAKqyfsqFk-hmedpleMersp
d1ux8a-  (  12 )    I-----geelLsqLVdTFYerVas-hplLkpifps---------------
d1x9fa-  (  22 )    Vwsssf-tdrrvaiVraVfddLfkhyptSkalfe--rv---kidep-esg
d1x9fb-  (  19 )    Aygs---ghdreaFSqaIwraTFaqvpeSrslfk--rv---hGddt-shp
d1x9fc-  (  22 )    lwrdtesskikigFGrlLLtklAkdipeVndlfk--rV---dieha-egp
d1xg0c-  (  44 )    Ivs------nascIvsdAVsgMicenpslisp-----------sgcytnr
d2gdma-  (  18 )    Fna------nipkhThrFFiLVleiapaakdlfsfLkgts------eVpq
d2qfka1  (   9 )    Irg------dlrtyAqdIFlaFLnkypderryfknYv-gk-sdqeLksma
d3d1ka1  (  17 )    Igk------ssdaIGndALsrMIvvypqTkiyfshwp-dv-tp----gSp
d3d1kb1  (  18 )    M--------dyddIGpkALSrCLvvypwtqryfsgfg-nlynaegImsna
d3sdha-  (  25 )    IGs------dkkgnGvaLMttlFadnqetigyfk-rLg---nVsqgmand
                              aaaaaaaaaaaaaaa    3                    

                             110       120       130       140       150 
d1a6ma-  (  60 )    dLkkhGvtvLtaLGaILkkkg--------hHea-eLkplAqshAt-k--h
d1alla-  (  80 )    mtatclrdLdyYLrLItyGIv---agdvtpIeeigvvgVremYks-l---
d1allb-  (  80 )    ryaacirdLdyYLryAtyAMl---aGdpsILdervlnglketYns-l---
d1asha-  (  60 )    fFakqGqkiLlaChvLCatYd---dr--etFna-yTrelldrhar--dhv
d1b0ba-  (  60 )    eMaaqAqsfkglVsnWVdnLdnag-----aLeg-qCktfAanhka---r-
d1b8da-  (  78 )    kinkcyrdIdhYMrLInysLv---vGgtGPVdewgiagsrevyra-l---
d1cg5a-  (  55 )    qVkkhGkrvMnalAdAThhLd--------nlhl-hLedlArkhGe-n--l
d1cg5b-  (  55 )    gVqqhAdkvqraLgeAIddLk--------kVei-nFqnlSgkhqe----i
d1cqxa1  (  49 )    eqgqqqqalaravyayaenIedpn-----slma-vLkniAnkhas----l
d1dlwa-  (  37 )    dmpnqtnktAaflcaaLgGpnawt-----------grnlkevhanm----
d1ecda-  (  54 )    pFethAnrivgffskIIgeLp--------nIea-dVntfvashkp---r-
d1gcvb-  (  49 )    rSsihAgivvgaLqdAVkhMd--------dVkt-lFkdlSkkhAd-d--l
d1h97a-  (  62 )    gIkhyArtlTeaivhMLkeIsnda-----eVkk-IAaqyGkdhts---rk
d1hlba-  (  69 )    qMqahAirvssimseyVeeLd-Sd-----iLpe-llatlarthdl---n-
d1idra-  (  50 )    nmsrlkgkqveffAaaLgGpepyt-----------Gapmkqvhqgr----
d1it2a-  (  67 )    eVkhqAvviFnkVneIInsMd---nq--eeiik-sLkdlSqkhkt-v--f
d1itha-  (  60 )    aYkaqTltvInyLdkVVdaLg---g----nAga-lMkakvpshda-m---
d1jboa-  (  80 )    gkakcardIgyyLrMVtyCLv---aggtGPMdeyliaglseinst-f---
d1jl7a-  (  54 )    gVaelGakvLaqigvAVshLg---de--gkMva-eMkavGvrhkg-ygnk
d1kr7a-  (  40 )    aYktqagktvdyinaaigg------------sa-daaglAsrhkg----r
d1mbaa-  (  59 )    kLrdvSsriFtrlneFVnnAanag-----kMsa-mlsqfAkehvg---f-
d1ngka-  (  40 )    dlagaeerlrmfLeqywggprtyseqrg-------hprlrmrhapf----
d1or4a-  (  88 )    svdrlkqtlkrhIqeMFaG------vIddefIe-kRnriasihlr-i---
d1q1fa-  (  60 )    eFldhIrkvMlvidaAvtnVedls-----slee-yLtslGrkhra---v-
d1s69a-  (  39 )    dmakqrahqkafltyaFggtdkyd-----------grymreahkelvenh
d1tu9a-  (  43 )    dmtaqkhllragImnLvmyArg-------msds-kLralGashSr--aal
d1urva-  (  77 )    qLrkhAsrvMgalntVVenLh---dp--dkVss-vLalvGkahAl-k--h
d1ux8a-  (  41 )    dltetarkqkQfLTqyLggpplYteehg-------hpmlrarhlpf----
d1x9fa-  (  65 )    eFkshLvrvAnglklLInlLddtl-----vlqs-hLghlAdqhiq---rk
d1x9fb-  (  60 )    aFiahAdrvLggldiAIstLdqpa-----tLke-eLdhlqvqheg---rk
d1x9fc-  (  66 )    kFsahAlriLngldlAInlLddpp-----alda-aLdhlAhqhev---re
d1xg0c-  (  78 )    rmaaclrdgeiILryVSyALl---sgdasvLedrCLnglketyss-l---
d2gdma-  (  56 )    nnpeLqahAgkvFklVyeAAiqlevtgvVvtda-tLknlGsvhvs----k
d2qfka1  (  51 )    kFgdhTekvFnlmMeVAdrAt---dC--vPlas-dAntlvqm----kqhs
d3d1ka1  (  55 )    nIkahGkkvMggialAvskId--------dlkt-gLmelSeqhAy-k--l
d3d1kb1  (  59 )    nVaahGikvLhgLdrGmknMd--------nIad-aYtdlStlhSe-k--l
d3sdha-  (  65 )    kLrghSitlMyalqnFIdqLdnpd-----dLVc-vVekfAvnhit---r-
                    aaaaaaaaaaaaaaaaa              aa a aaaaaaaa      

                             160       170       180       190       200 
d1a6ma-  (  98 )    kipikylefiSeAIihvLhsrhpgdFg-----------adAqgAMnkALe
d1alla-  ( 123 )    gtpieAiAeGVraMksVAt--slLs-------------gadaaeAgsyFd
d1allb-  ( 123 )    gvpigatvqAIqAMkevTa--glVg-------------ggAGkeMgiYFd
d1asha-  ( 102 )    hmppevwtdfwkLFeeYLgkktt--Ld-----------epTkqAWheIGr
d1b0ba-  ( 100 )    gisagqleaafkvLAgfMksy--------------gGd---egAWtaVag
d1b8da-  ( 121 )    nlpgsaYiaAFtfTrdrlcvprdMs-------------sqAGveFtsaLd
d1cg5a-  (  93 )    lvdphnfhlfadCIvvTLavnl-qaft-----------pvthcAVdkFLe
d1cg5b-  (  92 )    gvdtqnfkllgqTFMveLalhykktFr-----------pkehaAAykFfr
d1cqxa1  (  89 )    gvkpeqypivgehllaAIkevLg-----------naAtddiisAwaqAyg
d1dlwa-  (  72 )    gvsnaqFttvIghLrsALtgag---va-----------aalVeqTVavae
d1ecda-  (  91 )    gvthdqlnnfraGFvsYMkaht-------------dFa-gaeaAWgaTLd
d1gcvb-  (  87 )    hvdpgsfhlltdCIivELaylrkdcFt-----------phiqgIWdkFFe
d1h97a-  ( 103 )    -vtkdefmsgepiftkyFqnlVk-----------dae---GkaAVekFLk
d1hlba-  ( 108 )    kvgadhynlfakVLmeaLqaeLg-----------sdfnektrdAWakAfs
d1idra-  (  85 )    gitmhhfslvaghLadALtaag---vp-----------setiteIlgvia
d1it2a-  ( 108 )    kvdsiwfkelSsiFvstId------Gg---------------aeFekLFS
d1itha-  (  98 )    gitpkhfgqlLklVggVFqeefs--Ad-----------ptTvaAWgdAAg
d1jboa-  ( 123 )    dlspswyieALkyIkanHg----lt-------------gqAaveAnayId
d1jl7a-  (  97 )    hikaeyfeplgasLlsAMehrIggkMn-----------aaAkdAWaaAyg
d1kr7a-  (  73 )    nvgsaefhnakaclakACsah--------------gAp-----dlghaid
d1mbaa-  (  99 )    gvgsaqfenvrsMFpgfVasva-------------appagAdaAWtkLFg
d1ngka-  (  79 )    riSlierdawlrCMhtAVasidsetLd-----------dehrreLldyLe
d1or4a-  ( 127 )    gllpkwymgafqeLllsMidiYeasItn------qqellkAikATtkILn
d1q1fa-  ( 100 )    gvrlsSfstvgeSLlyMLekslg-----------pdFtpaTrtAWsrLyg
d1s69a-  (  78 )    glngehfdAvaeDllaTLkemg---vp-----------edliaeVaavag
d1tu9a-  (  83 )    dirpeLydlwldALLmAVaehD------------rdCdaeTrdaWrdVMg
d1urva-  ( 118 )    kvepvyfkilsgVileVVaeefasdFp-----------petqrAWakLrg
d1ux8a-  (  80 )    pitneradawlscMkdAMdhVg---Le-----------geirefLfgrLe
d1x9fa-  ( 106 )    gvtkeyfrGigeAFarvLpqvls------------cF---nvdAWnrÇfh
d1x9fb-  ( 101 )    -ipdnyfdAfktAILhvVaaqlg-----------rcy---dreAWdaÇId
d1x9fc-  ( 107 )    gvqkaHfkkfgeiLatgLpqvLd------------dy---dalAWksÇLk
d1xg0c-  ( 121 )    gvpansnaraVsiMkacAvafVnntasqkklstpqgdcsgLAseVggyFd
d2gdma-  ( 101 )    gvadahfpvvkeAIlkTIkeVVg-----------akwseeLnsAWtiAyd
d2qfka1  (  91 )    slttgnfeklFvALVeyMras-gqsFd--------------sqsWdrFGk
d3d1ka1  (  93 )    rvdpsnfkilnhCIlvVIstmfpkeFt-----------peahvSldkFLs
d3d1kb1  (  97 )    hvdpdnfkllsdCItiVLaakmghaft-----------aetqgAFqkFLa
d3sdha-  ( 105 )    kisaaefgkingPIkkvLask--------------nfg---dkyAnAWa-
                        aaaaaaaaaaaaaaaa                   aaaaaaaaaaa

                             210       220   
d1a6ma-  ( 137 )    --lfrkdIaakYkelgy        
d1alla-  ( 168 )    --yLigaMs                
d1allb-  ( 168 )    --yIcsgLs                
d1asha-  ( 139 )    --eFakeInk               
d1b0ba-  ( 133 )    --aLMgmIrpdm             
d1b8da-  ( 158 )    --yVinsLc                
d1cg5a-  ( 131 )    --lvayelsscyr            
d1cg5b-  ( 131 )    --lvaeAlssnyh            
d1cqxa1  ( 128 )    --nladvlmgmEselyersaeqpgg
d1dlwa-  ( 108 )    --tvrgdvvtv              
d1ecda-  ( 127 )    --tfFgmIfskm             
d1gcvb-  ( 126 )    --vvidAiskqyh            
d1h97a-  ( 138 )    --hVFpmmAaei             
d1hlba-  ( 147 )    --vvqavllvkh------------g
d1idra-  ( 121 )    --plAvdvts               
d1it2a-  ( 137 )    --iICiLlrsay             
d1itha-  ( 135 )    --vLvaaMk                
d1jboa-  ( 168 )    --yAinaLs                
d1jl7a-  ( 136 )    --dIsgalisGlqs           
d1kr7a-  ( 104 )    --dIlshl                 
d1mbaa-  ( 136 )    --lIIdaLkaaga            
d1ngka-  ( 118 )    --maahslvnSpf            
d1or4a-  ( 171 )    --LEqqLVl-------e        
d1q1fa-  ( 139 )    --avvqAMsrGwd-----------g
d1s69a-  ( 114 )    apahkrdvLnq              
d1tu9a-  ( 121 )    --rGiaviksyygs           
d1urva-  ( 157 )    --liyshVtaaYkevgw        
d1ux8a-  ( 116 )    --ltarhmvn               
d1x9fa-  ( 141 )    --rLvarIAkdL------------p
d1x9fb-  ( 136 )    --hIedgikgh-------------h
d1x9fc-  ( 142 )    --gIltkissrL             
d1xg0c-  ( 171 )    --kVtaaIs                
d2gdma-  ( 140 )    --elaivikkeMddaa         
d2qfka1  ( 126 )    --nLvsaLssagMk           
d3d1ka1  ( 132 )    --gValalaeryr            
d3d1kb1  ( 136 )    --aVvsalgkqyh            
d3sdha-  ( 137 )    --kLvaVVqaal             
                      aaaaaa                 

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]