PASS2
  • Superfamily Details
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Superfamily Details

Superfamily summary
Superfamily Name:  EndoU-like
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  EndoU-like
Number of Members:  2
Average Size: 
Members
SCOP ID Name Source
d2c1wa1 EndoU African clawed frog (Xenopus laevis) [TaxId: 8355]
d2gtia2 Nsp15, C-terminal domain Murine hepatitis virus, MHV [TaxId: 11138]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d2c1wa1  (   6 )    gqlnheLsklFneLwdAdqnrMkSgkdYrIslqgkAgyvsAsfpLFqfVd
d2gtia2  ( 217 )                                                      
                                                                      

                             60        70        80        90        100 
d2c1wa1  (  65 )    eekLksrktFatFisLLdnyemdtgvaevvtpeeiaennnFLdaILetkV
d2gtia2  ( 217 )                                   argtiftqsRllssFtprs
                                                                      

                             110       120       130       140       150 
d2c1wa1  ( 115 )    MkmAhdyLvrknqAkptrndFkvqLynIWFqlysrgsrpdSCGFEhVFvG
d2gtia2  ( 236 )    eEkdFdl------------dddvFiakysLqdy---------aFehVVyG
                                        aaaaaaa                aaaa   

                             160       170       180       190       200 
d2c1wa1  ( 167 )    eskrgqemMgLhNWVQFylQEkrknIdYkGYvarqnksrpdeddqVLnLq
d2gtia2  ( 267 )    sFn-qkiIgGLhLlIGLArrqqkSnLviqefvty--------dssihsyl
                                 aaaaaaa     bbbb                bbbbb

                             210       220       230       240       250 
d2c1wa1  ( 217 )    FnWk--emvkpvgSsFIGVSPEFEFALYTIVFlasqekmsrevVrLeeYe
d2gtia2  ( 308 )    ItDensgSsksvCTVId-LlLddFvdiVkslnlk--cvskvvnVnVdfkd
                    bbb         bbbb    aaaaaaaa             bbbbb  bb

                             260       270   
d2c1wa1  ( 265 )    LqIVVnRhgryIGtAyPvLlstnnp
d2gtia2  ( 355 )    fqFLwc------neekVtf      
                    bbb                      

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

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Response Logs

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]