PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  TM1631-like
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  TIM beta/alpha-barrel
Number of Members:  2
Average Size: 
Members
SCOP ID Name Source
d1vpqa- Hypothetical protein TM1631 Thermotoga maritima [TaxId: 2336]
d1vpya- Hypothetical protein EF0366 Enterococcus faecalis [TaxId: 1351]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1vpqa-  (   0 )      hmvyVGTsgFsfedWkgvvYpehlkpsqFLkyYwavlgFrIVELnfty
d1vpya-  (  -3 )    hhhhirLGLtsfss----------------tlyeyAsh--LpLVEdtAyy
                         bbbb                      aaaaaa     bb      

                             60        70        80        90        100 
d1vpqa-  (  48 )    ytqpswrsFvqmLrkTppdFyFTVkTpgsVThv-lwkegkdPkedMenft
d1vpya-  (  41 )    -gIPpkerVaewvkaVpenFrFV-kVYsGIScqgewqtyyaseeeItaFl
                         aaaaaaaa       bb                        aaaa

                             110       120       130       140       150 
d1vpqa-  (  97 )    rqIepLieeqrLkMTLAQFpfsFkfsrknveYLekLresYp-yeLAVEFr
d1vpya-  (  91 )    es-apLieskkLFAFLVQFsgtFgctkenvayLqkIrhWFkdlpIAIELr
                    a             bbbb        aaaaaaaaaaaaa     bbbb  

                             160       170       180       190       200 
d1vpqa-  ( 146 )    hysWdreeTYefLr--nhgITFVVVDEPklp-gLFpyrpitTtd-yAYFR
d1vpya-  ( 141 )    nnsWYqpnfvkqlqfkenqFSLVIVDEPqiptnpVpfypyvTnpnlVLFR
                     333                bb bbb                    bbbb

                             210       220       230       240       250 
d1vpqa-  ( 192 )    FHGrnerWfeaegeerydylYseeeLktLfedVvelsrrVkeTYVFFnNC
d1vpya-  ( 193 )    FHGrnaa----gwkkrtlyhYntqeIadLSeaVlk-sqeAkeVGVIFnNn
                    b                     aaaaaaaaaaaa        bbbbb   

                             260       
d1vpqa-  ( 242 )    ykGqAAiNAlqFkkmle-e
d1vpya-  ( 247 )    sggdAaeNAlq-qkvLnls
                       aaaaaaa         

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

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Response Logs

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]