• Superfamily Details
  • Alignment & HMM

Superfamily Details

Superfamily summary
Superfamily Name:  Transcriptional repressor TraM
Class Name:  All alpha proteins
Fold Name:  Long alpha-hairpin
Number of Members:  1
Average Size: 
SCOP ID Name Source
d1rfya- Transcriptional repressor TraM Agrobacterium tumefaciens [TaxId: 358]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1rfya-  (  10 )    kkvelrpligltrglpptdletiTidairthrrLvekadelfqaLpetyk
                          aaaaaa    aaaaaaaaaaaaaaaaaaaaaaaaaaa   aaaa

                             60        70        80        
d1rfya-  (  60 )    tgqacggpqhiryieasiemhaqmsaLnTlisilgfiPk

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x