Databases

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GenDIS

A database of Genomic Distribution of structural Superfamilies that identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases.

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PASS2

An automatic version of the original superfamily alignment database, CAMPASS, containing alignments of protein structures at the superfamily level and in direct correspondence with SCOPe 2.07 release.

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STIFDB

A database of abiotic stress responsive genes and their predicted abiotic transcription factor binding sites in Arabidopsis thaliana.

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3PFDB

A database of best representative PSSM profiles (BRPs) of protein families generated using a novel data mining approach.

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MegaMotifBase

A database of structural motifs for protein structures related at the family and/or superfamily level.

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SMoS

A database of structural motifs of aligned protein domain superfamilies.

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SUPFAM

A database that relates two homologous protein families in a multiple sequence alignment database of either known or unknown structure.

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iMOTdb

A database of spatially interacting motifs identified for all structures in PDB.

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TulsiDb

A database of Ocimum tenuiflorum.

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LenVarDb

A database of length variant protein domains.

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DOR

A database of olfactory receptors – an integrated repository for sequence and secondary structural information of olfactory receptors in selected eukaryotic genomes.

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DDBASE

A database of globular domains, derived from a non-redundant set of proteins.

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DSDBASE 2.0

A database on disulphide bonds in proteins that provides information on native disulphides and those which are stereochemically possible between pairs of residues in a protein.

Webservers

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SMpred

A support vector machine approach to identify structural motifs in protein structure without using evolutionary information

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HORI

A web server to compute higher order interactions (pairwise interaction, triplet interactions and quadruple interactions) in a protein structure.

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PeptideMine

A webserver developed for identifying and analysing peptides suitable for protein-peptide binding studies.

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IWS

An Integrated Web Server for protein sequence and structure analysis.

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PURE

A webserver to identify putative domains in the unassigned regions.

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COILCHECK+

A webserver for the validation of coiled coils.

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SMotif

A webserver to identify a set of structural motifs from protein structures.

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Harmony

A webserver for Protein Structure Assessment.

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FMALIGN

A webserver that aligns two or more sequences by fixing sequentially conserved region or motifs within the aligned sequences.

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iMOT

An automated method for identifying conserved spatially interacting regions across proteins.

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DIAL

A web server for the automatic identification of structural domains given the three-dimensional coordinates of a protein. 

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MODIP

A webserver for modelling disulphide bonds in proteins.

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3DSwap

A curated knowledgebase of protein structures that are reported to be involved in 3-Dimensional Domain Swapping.

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RStrucfam

A web server to predict the structure, type of cognate RNA(s) and function(s) of proteins from mere sequence information.

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SCANMOT

A web server that searches for similarities between proteins by simultaneous matching of multiple motifs.

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DockScore

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POEAS

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Address

Lab 25 NCBS
Tata Institute of Fundamental Research
Bellary Road
Rajiv Gandhi Nagar, Kodigehalli
Bengaluru, Karnataka 560065


Contacts

Email: mini[at]ncbs[dot]res[dot]in
Phone: +91 2366 6251