Databases

GenDIS

A database of Genomic Distribution of structural Superfamilies that identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases.

PASS2

An automatic version of the original superfamily alignment database, CAMPASS, containing alignments of protein structures at the superfamily level and in direct correspondence with SCOPe 2.07 release.

STIFDB

A database of abiotic stress responsive genes and their predicted abiotic transcription factor binding sites in Arabidopsis thaliana.

3PFDB

A database of best representative PSSM profiles (BRPs) of protein families generated using a novel data mining approach.

MegaMotifBase

A database of structural motifs for protein structures related at the family and/or superfamily level.

SMoS

A database of structural motifs of aligned protein domain superfamilies.

SUPFAM

A database that relates two homologous protein families in a multiple sequence alignment database of either known or unknown structure.

iMOTdb

A database of spatially interacting motifs identified for all structures in PDB.

TulsiDb

A database of Ocimum tenuiflorum.

LenVarDb

A database of length variant protein domains.

DOR

A database of olfactory receptors – an integrated repository for sequence and secondary structural information of olfactory receptors in selected eukaryotic genomes.

DDBASE

A database of globular domains, derived from a non-redundant set of proteins.

DSDBASE

A database on disulphide bonds in proteins that provides information on native disulphides and those which are stereochemically possible between pairs of residues in a protein.

Webservers

SMpred

A support vector machine approach to identify structural motifs in protein structure without using evolutionary information

HORI

A web server to compute higher order interactions (pairwise interaction, triplet interactions and quadruple interactions) in a protein structure.

PeptideMine

A webserver developed for identifying and analysing peptides suitable for protein-peptide binding studies.

IWS

An Integrated Web Server for protein sequence and structure analysis.

PURE

A webserver to identify putative domains in the unassigned regions.

COILCHECK+

A webserver for the validation of coiled coils.

SMotif

A webserver to identify a set of structural motifs from protein structures.

Harmony

A webserver for Protein Structure Assessment.

FMALIGN

A webserver that aligns two or more sequences by fixing sequentially conserved region or motifs within the aligned sequences.

iMOT

An automated method for identifying conserved spatially interacting regions across proteins.

DIAL

A web server for the automatic identification of structural domains given the three-dimensional coordinates of a protein. 

MODIP

A webserver for modelling disulphide bonds in proteins.

3DSwap

A curated knowledgebase of protein structures that are reported to be involved in 3-Dimensional Domain Swapping.

RStrucfam

A web server to predict the structure, type of cognate RNA(s) and function(s) of proteins from mere sequence information.

SCANMOT

A web server that searches for similarities between proteins by simultaneous matching of multiple motifs.

DockScore

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Address

Lab 25 NCBS
Tata Institute of Fundamental Research
Bellary Road
Rajiv Gandhi Nagar, Kodigehalli
Bengaluru, Karnataka 560065


Contacts

Email: mini[at]ncbs[dot]res[dot]in
Phone: 080 2366 6251