STIFDB - 100bp Information | TAIR Gene ID : AT2G42540
STIFDB - 100bp TFmap : AT2G42540
Details of 100bp TFmap | TAIR Gene ID : AT2G42540
| No: |
Transcription Factor |
Z - Score |
Normalisation Score |
Start Residue |
End Residue |
Chromosome Location |
Orientation |
Validation |
|---|
| 1 | Myb_box5_MYB | 1.4115 | 1.167/ 70 | -58 | -53 | Upstream region | Reverse | Predicted |
| 2 | Myb_box5_MYB | 1.4115 | 1.167/ 70 | -56 | -51 | Upstream region | Forward | Predicted |
| 3 | Myb_box5_MYB | 1.4115 | 1.167/ 70 | -48 | -43 | Upstream region | Reverse | Predicted |
| 4 | G_ABRE_bZIP | 4.2831 | 2.333/ 70 | 139 | 146 | 5'UTR | Forward | Validated |
| 5 | G_box_bHLH | 3.6676 | 1.556/ 70 | -37 | -32 | Upstream region | Forward | Predicted |
| 6 | G_box_bHLH | 3.6676 | 1.556/ 70 | 139 | 144 | 5'UTR | Forward | Predicted |
| 7 | Myb_box1_MYB | 1.6087 | 2.333/ 70 | -48 | -43 | Upstream region | Reverse | Predicted |
| 8 | DREB_AP2_EREBP | 3.7161 | 1.750/ 70 | -89 | -84 | Upstream region | Forward | Validated |
| 9 | DREB_AP2_EREBP | 3.7161 | 1.750/ 70 | 88 | 93 | 5'UTR | Forward | Validated |
| 10 | Myb_box3_MYB | 2.3820 | 2.333/ 70 | -48 | -43 | Upstream region | Reverse | Predicted |
Details about the Gene : AT2G42540 :
| TAIR ID | AT2G42540 |
|---|
| Alternate Names | COR15A,
COLD-REGULATED 15A,
COR15
|
|---|
| Chromosome Position | 17718509-17718346(chr2)
|
|---|
| Transcription Factors | Myb_box5_MYB
DREB_AP2_EREBP
Myb_box1_MYB
G_box_bHLH
Myb_box3_MYB
|
|---|
Experimental Data from
Microarray Database | DRASTIC-COLD, DRASTIC-DROUGHT, DRASTIC-NACL, RARGE-COLD, STRESSLINK-COLD-DROUGHT-SALT |
|---|
| References | Elizabeth A. Bray, 2002. Annals of Botany 89:803-811 |
|---|
Download Sequence Data :
Click here to download AT2G42540 [100bp + UTR] Region in Fasta format
Contact:
Prof. R. Sowdhamini [mini@ncbs.res.in]
Prof. M. Udayakumar
STIFdb Team:
Prof. R. Sowdhamini
Prof. M. Udayakumar
K. Shameer
S. Ambika
Susan Mary Varghese
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