STIFDB - 1000bp Information | TAIR Gene ID : AT2G42540

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STIFdb - 1000bp TFmap : AT2G42540

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Details of 1000bp TFmap | TAIR Gene ID : AT2G42540

No:	Transcription Factor	Z - Score	Normalisation Score	Start Residue	End Residue	Chromosome Location	Orientation	Validation
1	Myb_box5_MYB	1.3544	2.359/ 335	-868	-863	Upstream region	Reverse	Predicted
2	Myb_box5_MYB	1.3544	2.359/ 335	-866	-861	Upstream region	Forward	Predicted
3	Myb_box5_MYB	1.3544	2.359/ 335	-865	-860	Upstream region	Reverse	Predicted
4	Myb_box5_MYB	1.3544	2.359/ 335	-863	-858	Upstream region	Forward	Predicted
5	Myb_box5_MYB	1.3544	2.359/ 335	-363	-358	Upstream region	Reverse	Predicted
6	Myb_box5_MYB	1.3544	2.359/ 335	-350	-345	Upstream region	Forward	Predicted
7	Myb_box5_MYB	1.3544	2.359/ 335	-325	-320	Upstream region	Reverse	Predicted
8	Myb_box5_MYB	1.3544	2.359/ 335	-58	-53	Upstream region	Reverse	Predicted
9	Myb_box5_MYB	1.3544	2.359/ 335	-56	-51	Upstream region	Forward	Predicted
10	Myb_box5_MYB	1.3544	2.359/ 335	-48	-43	Upstream region	Reverse	Predicted
11	G_ABRE_bZIP	4.0085	2.393/ 335	139	146	5'UTR	Forward	Validated
12	G_box_bHLH	3.5278	1.117/ 335	-37	-32	Upstream region	Forward	Predicted
13	G_box_bHLH	3.5278	1.117/ 335	139	144	5'UTR	Forward	Predicted
14	DREB_AP2_EREBP	3.5554	1.595/ 335	-89	-84	Upstream region	Forward	Validated
15	DREB_AP2_EREBP	3.5554	1.595/ 335	88	93	5'UTR	Forward	Validated
16	Myb_box3_MYB	2.2737	0.882/ 335	-48	-43	Upstream region	Reverse	Predicted
17	Myb_box1_MYB	1.5211	0.620/ 335	-48	-43	Upstream region	Reverse	Predicted
18	AuxRE_ARF	2.9226	1.047/ 335	-892	-887	Upstream region	Reverse	Predicted
19	N_box_bHLH	3.5272	2.094/ 335	-988	-983	Upstream region	Forward	Predicted
20	HSE1_HSF	0.9837	0.429/ 335	-900	-893	Upstream region	Forward	Predicted

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Details about the Gene : AT2G42540 :

TAIR ID	AT2G42540
Alternate Names	COR15A, COLD-REGULATED 15A, COR15
Chromosome Position	17719409-17719009(chr2)
Transcription Factors	Myb_box3_MYB Myb_box1_MYB HSE1_HSF Myb_box5_MYB AuxRE_ARF DREB_AP2_EREBP G_box_bHLH N_box_bHLH
Experimental Data from Microarray Database	DRASTIC-COLD, DRASTIC-DROUGHT, DRASTIC-NACL, RARGE-COLD, STRESSLINK-COLD-DROUGHT-SALT
References	Elizabeth A. Bray, 2002. Annals of Botany 89:803-811

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Download Sequence Data :
Click here to download AT2G42540 [1000bp + UTR] Region in Fasta format

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Contact:
Prof. R. Sowdhamini [mini@ncbs.res.in]
Prof. M. Udayakumar

STIFdb Team:
Prof. R. Sowdhamini
Prof. M. Udayakumar
K. Shameer
S. Ambika
Susan Mary Varghese