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Superfamily :     SWIB/MDM2 domain Class :     All alpha proteins Fold :     SWIB/MDM2 domain Number of Members :     3 Average Size :     93

Representative Superpose

Alignment

Matrices

Tree

PCA

CUSP

HMM (?)

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1uhra-	1	A	93	A	93	SWI/SNF RELATED, MATRIX ASSOCIATED, ACTIN	MUS MUSCULUS	NA	NA
d1v32a-	1	A	101	A	101	HYPOTHETICAL PROTEIN RAFL09-47-K03	ARABIDOPSIS THALIANA	NA	NA
d2axia1	25	A	109	A	85	UBIQUITIN-PROTEIN LIGASE E3 MDM2	HOMO SAPIENS	1.40	NA

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1uhra- ( 1 ) gssgssg-q-ppqfkldprlarll---gih---tqtrpviiqalwqy d1v32a- ( 1 ) gssgss---gkrfefvgwgsrqlieflhslgkdtsemisrydvsdtiaky d2axia1 ( 25 ) etlVrPkplLlkLLksvgaqkd-tYtMkeVlfyLgqY aaaa aaaaaaaaaaa 60 70 80 90 100 d1uhra- ( 40 ) ikthklqdpherefvlcdk-ylqqifesqrmkfs---eipqrlhallmpp d1v32a- ( 48 ) iskeglldpsnkkkvvcdk-rlvllfgtrtifrm---kvydllekhyke- d2axia1 ( 61 ) imtkrlydekqqhiVyCsndlLGdLFgvpsFsvkehrkiytmIyrnLvv aaa bb aaaa bb aaaaa 110 d1uhra- ( 86 ) epsg-----pssg d1v32a- ( 93 ) ----nqdsgpssg d2axia1

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

List of outliers  

No outliers found

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy