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Superfamily :     Domain of the SRP/SRP receptor G-proteins Class :     All alpha proteins Fold :     Four-helical up-and-down bundle Number of Members :     4 Average Size :     88

Representative Superpose

Alignment

Matrices

Tree

PCA

CUSP

HMM (?)

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1j8mf1	3	F	86	F	84	SIGNAL RECOGNITION 54 KDA PROTEIN	ACIDIANUS AMBIVALENS	2.00	0.216
d1ls1a1	1	A	88	A	88	SIGNAL RECOGNITION PARTICLE PROTEIN	THERMUS AQUATICUS	1.10	0.135
d1vmaa1	2	A	81	A	80	CELL DIVISION PROTEIN FTSY	THERMOTOGA MARITIMA	1.60	0.207
d1wgwa-	1	A	99	A	99	'SIGNAL RECOGINITION PARTICLE 54	MUS MUSCULUS	NA	NA

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1j8mf1 ( 3 ) lldn-LrdtvrkFltgsssydkavedFIkeLqks d1ls1a1 ( 1 ) mfqqlsar-lqeaigrlrgrgriteedlkatlreirra d1vmaa1 ( 2 ) glfdflkkglqktketffgrVvklLkgk-kLddetreeLeelLiqA d1wgwa- ( 1 ) gssgs-------sgadlgrk-itsalrslsnatiineevlnamlkevcta aaaaa aaaaaaaa aaaaaaaaaaaaaa 60 70 80 90 100 d1j8mf1 ( 36 ) LisadvnvklVfslTnkIkerlk-nekpptyie-rrewFIkIVydElsnl d1ls1a1 ( 38 ) lmdadvnlevardfvervreeal-gkqvle-sltpaevilatvyealkea d1vmaa1 ( 47 ) ----dvg----vetTeyILerLe-ekd---------gdAlesLkeIilei d1wgwa- ( 43 ) lleadvniklvkqlrenvksaidleema--sglnkrkmiqhavfkelvkv aa aaaaaaaaaaaaaaa aaaaaaaaaaaaaaaa d1j8mf1 ( 84 ) f--gg d1ls1a1 ( 86 ) l--gg d1vmaa1 ( 79 ) lnf d1wgwa- ( 91 ) kvysgpssg

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

List of outliers  

SCOP PDBid
d1okkd1

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy