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Superfamily :     Acyl-CoA dehydrogenase C-terminal domain-like Class :     All alpha proteins Fold :     Bromodomain-like Number of Members :     9 Average Size :     169

Representative Superpose

Alignment

Matrices

Tree

PCA

CUSP

HMM (?)

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1ivha1	242	A	392	A	151	ISOVALERYL-COA DEHYDROGENASE	HOMO SAPIENS	2.60	0.207
d1r2ja1	213	A	365	A	144	PROTEIN FKBI	STREPTOMYCES HYGROSCOPICUS	2.10	0.247
d1rx0a1	241	A	393	A	153	ACYL-COA DEHYDROGENASE FAMILY MEMBER 8,	HOMO SAPIENS	1.77	0.179
d1siqa1	239	A	392	A	154	GLUTARYL-COA DEHYDROGENASE	HOMO SAPIENS	2.10	0.198
d1u8va1	276	A	490	A	215	GAMMA-AMINOBUTYRATE METABOLISM	CLOSTRIDIUM AMINOBUTYRICUM	1.60	0.163
d1w07a1	273	A	461	A	186	ACYL-COA OXIDASE	ARABIDOPSIS THALIANA	2.00	0.204
d1w07a2	462	A	659	A	198	ACYL-COA OXIDASE	ARABIDOPSIS THALIANA	2.00	0.204
d2c12a1	261	A	430	A	170	NITROALKANE OXIDASE	FUSARIUM OXYSPORUM	2.07	0.188
d2d29a1	235	A	387	A	153	ACYL-COA DEHYDROGENASE	THERMUS THERMOPHILUS	1.65	0.185

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1ivha1 ( 242 ) kgvyv-lms-gldlerlvlAggPLglMqaVLdhTipyLhvr-eaf- d1r2ja1 ( 213 ) slpml-vaa-slaygrksvAwgCVgiLraCrtaAvahArtr-eqf- d1rx0a1 ( 241 ) g--qgfli-avr-glNggRiniAscSlgaAhaSvilTrdhLnvr-kqf- d1siqa1 ( 239 ) lgg-pfg-clnnaRygiAwgVLgaSefClhtArqyAldr-mqf- d1u8va1 ( 276 ) qeydfagmm-ver-fagyhrqsYGgckvgvGdvVigaAalAAdyng---- d1w07a1 ( 273 ) pkql-vyg-tmVyvRqtiVadASnaLsrAVciAtrySavr-rqfg d1w07a2 ( 462 ) ahllqÇrSgVqkaedWln-pdvVleAFeARalrmavtcaknlskfe d2c12a1 ( 261 ) pglkaqgl-vet-afAmsAAlVGamAigtAraAfeeAlvfAksd-trg- d2d29a1 ( 235 ) g--kgfyd-vlr-vlDggrigiAamAVglGqaALdyAlayAkgr-eaf- aa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaa 60 70 80 90 100 d1ivha1 ( 284 ) ---gqkiGh-fqlmqgkmadMytrLmaCrqyvynvakaÇde--------- d1r2ja1 ( 255 ) ---grplgd-hqlvaghiadLwtAEqiAarvCeyAsdhm----------- d1rx0a1 ( 284 ) ---geplas-nqylqftladMatrLvaArlmVrnAavAlqe--------- d1siqa1 ( 279 ) ---gvplar-nqliqkkladMlteItlGlhaClqLgrlkdq--------- d1u8va1 ( 320 ) ------aqk-ashVkdklieMthlNetLyccGiaCsa---egyptaagn- d1w07a1 ( 315 ) agietqvid-yktqqnrLfpllasAyafrfvGewLkwlytdV--terlaa d1w07a2 ( 507 ) nqeq--GfqelladlveaaiAhcqlivVskfiakleq------------- d2c12a1 ( 306 ) --gskhiie-hqsvadkLidCkirLetSrllVwkAvtTled--------- d2d29a1 ( 278 ) ---grpiae-fegvsfklaeaateLeaArllylkAaelkda--------- 333 aaaaaaaaaaaaaaaaaaaaaaaaaa 110 120 130 140 150 d1ivha1 ( 321 ) g-hç----takdCAgVIlySAecAtqVAldGiqCFggnGyi--------- d1r2ja1 ( 297 ) ---------vpatilAKhvAAerAaagAatAaqVLasaGa---------- d1rx0a1 ( 321 ) e-rk---dAvalCSmAKlfATdeCfaICnqAlqMHggyGyl--------- d1siqa1 ( 316 ) d-ka----apemVSllKrnNCgkALdIArqArdMLggnGis--------- d1u8va1 ( 359 ) ---yQI--dlllANvCKqnITrfPyeIVrlAedIAgglMvtMpseadfks d1w07a1 ( 365 ) sdfatlpeAhAcTAglKSlTTtaTadGIeeCrkLCgghGyl--------- d1w07a2 ( 542 ) digg-kgvkkqlnnlCYiyALylLhkhlgdFlsT---nÇIt--------- d2c12a1 ( 344 ) eale-wkvkLemAMqTKiyTTdvAveCVidAmkAVgmkSya--------- d2d29a1 ( 315 ) g-rp----ftleAAqAKlfASeAAVkACdeAiqILggyGyv--------- aaaaaaaaaaaaaaaaaaaaaaaaa 333 160 170 180 190 200 d1ivha1 ( 357 ) --------------------------------ndfpMgrFl-----rdAk d1r2ja1 ( 330 ) ---------------------------------ghvVeray-----rdAk d1rx0a1 ( 358 ) --------------------------------kdyaVqqyv-----rdSr d1siqa1 ( 352 ) --------------------------------deyhVirha-----mnLe d1u8va1 ( 404 ) etvvgrdgetigdfcnkffaaaptCtteermrvLrfLenIClgasavgYr d1w07a1 ( 406 ) --------------------------------wcsgLpeLf-----avyv d1w07a2 ( 579 ) ----------------------------------------p-----kqas d2c12a1 ( 384 ) --------------------------------kdmsFprLl-----neVm d2d29a1 ( 351 ) --------------------------------kdypVeryw-----rdAr aaaaa aaa 210 220 230 240 250 d1ivha1 ( 370 ) -lyeigAgtSe-vRrlvigrafn-ad d1r2ja1 ( 342 ) -lmeiiegsse-mCrvmlaqhal-alp d1rx0a1 ( 371 ) -vhqilegsNe-vMrilisrsll-qe d1siqa1 ( 365 ) -avntyegthd-iHalilgrait-giqafta d1u8va1 ( 454 ) teSmhgagspq-aQrimiarqgninakkelakaiagik d1w07a1 ( 419 ) -pActyegdnv-vLqlqvarflmktvaqlgsg-------------kvpvg d1w07a2 ( 584 ) -lAnd---qLr-sLytqvrpnavalvdafnytdhylnsvlgrydgnvypk d2c12a1 ( 397 ) -cyplfdggNiglRrrqmqrVmaledyepwaAtyg d2d29a1 ( 364 ) -lTrigegtSe-iLklviarrll-eav aa aaaaaaaaaa 260 270 280 d1ivha1 d1r2ja1 d1rx0a1 d1siqa1 d1u8va1 d1w07a1 ( 454 ) ttaymgra d1w07a2 ( 629 ) lfeealkdplndsvvpdgyqeylrpvlqqql d2c12a1 d2d29a1

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy