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Superfamily :     CRAL/TRIO N-terminal domain Class :     All alpha proteins Fold :     RuvA C-terminal domain-like Number of Members :     3 Average Size :     78

Representative Superpose

Alignment

Matrices

Tree

PCA

CUSP

HMM (?)

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1auaa1	4	A	96	A	93	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P	SACCHAROMYCES CEREVISIAE	2.50	0.211
d1olma1	1	A	75	A	75	SEC14-LIKE PROTEIN 2	HOMO SAPIENS	1.95	0.180
d1r5la1	25	A	90	A	66	PROTEIN (ALPHA-TOCOPHEROL TRANSFER PROTEIN)	HOMO SAPIENS	1.50	0.187

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1auaa1 ( 4 ) qqekeflesypqncppdalpGtpgnldsaqekaLaeLrklLedagf-i-e d1olma1 ( 1 ) msGrvgdlsprqkealakFrenVq-dvLpaLp d1r5la1 ( 25 ) qpglaaLrrrAreagvplap aaaaaaaa 60 70 80 90 d1auaa1 ( 52 ) r-lddstLLrfLrarkfdvqlAkemFencekwrkdyg--tdtilqdfh d1olma1 ( 32 ) n-pddyfLLrwLrarsfdlqkSeamLrkhvefrkqkd--idniis-wq d1r5la1 ( 45 ) lpltdsFLlrfLrardfdldlAwrlLknyykwraecpeisadlhp--r aaaaaaaaaa aaaaaaaaaaaaaaaaa

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

List of outliers  

No outliers found

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy