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Superfamily :     "Winged helix" DNA-binding domain Class :     All alpha proteins Fold :     DNA/RNA-binding 3-helical bundle Number of Members :     47 Average Size :     89

Representative Superpose

Alignment

Matrices

Tree

PCA

CUSP

HMM (?)

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1d5va-	1	A	94	A	94	S12 TRANSCRIPTION FACTOR (FKH-14)	HOMO SAPIENS	NA	NA
d1e17a-	92	A	181	A	90	AFX	HOMO SAPIENS	NA	NA
d1gvja-	296	A	436	A	141	C-ETS-1 PROTEIN	HOMO SAPIENS	1.53	0.208
d1hbxg-	2	G	156	G	112	SERUM RESPONSE FACTOR	HOMO SAPIENS	3.15	0.252
d1hksa-	43	A	148	A	106	HEAT-SHOCK TRANSCRIPTION FACTOR	DROSOPHILA MELANOGASTER	NA	NA
d1b6aa1	375	A	448	A	74	METHIONINE AMINOPEPTIDASE	HOMO SAPIENS	1.60	0.187
d1j5ya1	4	A	67	A	64	TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR	THERMOTOGA MARITIMA	2.30	0.190
d1biaa1	1	A	63	A	63	BIRA BIFUNCTIONAL PROTEIN	ESCHERICHIA COLI	2.30	NULL
d1mkma1	1	A	75	A	75	ICLR TRANSCRIPTIONAL REGULATOR	THERMOTOGA MARITIMA	2.20	0.232
d1on2a1	2	A	62	A	61	TRANSCRIPTIONAL REGULATOR MNTR	BACILLUS SUBTILIS	1.61	0.220
d1lvaa4	575	A	634	A	60	SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR	MOORELLA THERMOACETICA	2.12	0.215
d1in4a1	255	A	329	A	75	HOLLIDAY JUNCTION DNA HELICASE RUVB	THERMOTOGA MARITIMA	1.60	0.234
d1j75a-	113	A	169	A	57	TUMOR STROMA AND ACTIVATED MACROPHAGE PROTEIN	MUS MUSCULUS	1.85	0.218
d1fp2a1	8	A	108	A	101	ISOFLAVONE O-METHYTRANSFERASE	MEDICAGO SATIVA	1.40	0.217
d1fp1d1	19	D	128	D	110	ISOLIQUIRITIGENIN 2'-O-METHYLTRANSFERASE	MEDICAGO SATIVA	1.82	0.226
d1lvaa3	511	A	574	A	64	SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR	MOORELLA THERMOACETICA	2.12	0.215
d1lj9a-	2	A	145	A	144	TRANSCRIPTIONAL REGULATOR SLYA	ENTEROCOCCUS FAECALIS	1.60	0.248
d1ft9a1	134	A	213	A	78	CARBON MONOXIDE OXIDATION SYSTEM TRANSCRIPTION	RHODOSPIRILLUM RUBRUM	2.60	0.230
d1jgsa-	7	A	144	A	138	MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARR	ESCHERICHIA COLI	2.30	0.247
d1hw1a1	5	A	78	A	74	FATTY ACID METABOLISM REGULATOR PROTEIN	ESCHERICHIA COLI	1.50	0.198
d1ldda-	773	A	846	A	74	ANAPHASE PROMOTING COMPLEX	SACCHAROMYCES CEREVISIAE	2.00	0.205
d1ldja1	687	A	776	A	90	CULLIN HOMOLOG 1	HOMO SAPIENS	3.00	0.247
d1bjaa-	2	A	96	A	95	TRANSCRIPTION REGULATORY PROTEIN MOTA	BACTERIOPHAGE T4	2.19	0.208
d1hkqa-	8	A	132	A	125	REPLICATION PROTEIN	PSEUDOMONAS SYRINGAE PV. SAVASTANOI	2.75	0.238
d1jhfa1	2	A	72	A	71	LEXA REPRESSOR	ESCHERICHIA COLI	1.80	0.240
d1dp7p-	1	P	76	P	76	MHC CLASS II TRANSCRIPTION FACTOR HRFX1	1.50	0.192	All alpha proteins
d1o57a1	2	A	74	A	73	PUR OPERON REPRESSOR	BACILLUS SUBTILIS	2.20	0.188
d1cf7a-	16	A	82	A	67	PROTEIN (TRANSCRIPTION FACTOR E2F-4)	HOMO SAPIENS	2.60	0.223
d1cf7b-	68	B	149	B	82	PROTEIN (TRANSCRIPTION FACTOR E2F-4)	HOMO SAPIENS	2.60	0.223
d1hsta-	24	A	97	A	74	HISTONE H5	GALLUS GALLUS	2.60	0.270
d1ixca1	2	A	89	A	81	LYSR-TYPE REGULATORY PROTEIN	RALSTONIA EUTROPHA	2.20	0.218
d1lnwa-	2	A	142	A	137	MULTIDRUG RESISTANCE OPERON REPRESSOR	PSEUDOMONAS AERUGINOSA	2.10	0.242
d1lvaa1	377	A	437	A	60	SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR	MOORELLA THERMOACETICA	2.12	0.215
d1bbya-	175	A	243	A	69	RAP30	HOMO SAPIENS	NA	NA
d1ka8a-	1	A	100	A	100	PUTATIVE P4-SPECIFIC DNA PRIMASE	BACTERIOPHAGE P4	2.95	0.241
d1i5za1	138	A	206	A	69	CATABOLITE GENE ACTIVATOR PROTEIN	ESCHERICHIA COLI	1.90	0.215
d1i27a-	445	A	517	A	73	TRANSCRIPTION FACTOR IIF	HOMO SAPIENS	1.02	NA
d1hsja1	373	A	487	A	115	FUSION PROTEIN CONSISTING OF STAPHYLOCOCCUS	ESCHERICHIA COLI AND STAPHYLOCOCCUS	2.30	0.263
d1ku9a-	2	A	151	A	146	HYPOTHETICAL PROTEIN MJ223	METHANOCOCCUS JANNASCHII	2.80	0.241
d1lvaa2	438	A	510	A	73	SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR	MOORELLA THERMOACETICA	2.12	0.215
d1fnna1	277	A	388	A	103	CELL DIVISION CONTROL PROTEIN 6	PYROBACULUM AEROPHILUM	2.00	0.221
d1b9ma1	-1	A	126	A	120	PROTEIN (MODE)	ESCHERICHIA COLI	1.75	0.234
d1bm9a-	3	A	122	A	120	REPLICATION TERMINATOR PROTEIN	BACILLUS SUBTILIS	2.00	0.206
d1d8ja-	1	A	81	A	81	GENERAL TRANSCRIPTION FACTOR TFIIE-BETA	HOMO SAPIENS	NA	NA
d1aoya-	1	A	78	A	78	ARGININE REPRESSOR	ESCHERICHIA COLI	NA	NA
d1b4aa1	4	A	78	A	75	ARGININE REPRESSOR	BACILLUS STEAROTHERMOPHILUS	2.50	0.224
d1fsha-	12	A	105	A	94	DISHEVELLED-1	MUS MUSCULUS	NA	NA

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1d5va- ( 1 ) ml---v---kp-------------p d1e17a- ( 92 ) srrn---a---wg-------------n d1gvja- ( 296 ) mnhk---p---kg-------------t d1hbxg- ( 2 ) d1hksa- ( 43 ) g---sg-------------v d1b6aa1 ( 375 ) hddmecshymknf----------dvgh---v---pi-------------r d1j5ya1 ( 4 ) k---tv-------------r d1biaa1 ( 1 ) mk-------------d d1mkma1 ( 1 ) mn-------------t d1on2a1 ( 2 ) t d1lvaa4 ( 575 ) d1in4a1 ( 255 ) eg-------------L d1j75a- ( 113 ) d1fp2a1 ( 8 ) rkpseifkaqallykhiyafi---d---sm-------------S d1fp1d1 ( 19 ) qtedsaclsamvlttnlv---y---pa-------------v d1lvaa3 ( 511 ) f---s---et-------------q d1lj9a- ( 2 ) d1ft9a1 ( 134 ) d1jgsa- ( 7 ) d1hw1a1 ( 5 ) a---q---sp-------------a d1ldda- ( 773 ) k-------------y d1ldja1 ( 687 ) pmkteq----------kqeq---e---tt-------------h d1bjaa- ( 2 ) skvtyIikaS---n---dv-------------L d1hkqa- ( 8 ) qsnkLiesShtL d1jhfa1 ( 2 ) ka-------------l d1dp7p- ( 1 ) d1o57a1 ( 2 ) k---fr-------------r d1cf7a- ( 16 ) srh---e---ks-------------l d1cf7b- ( 68 ) g---kg-------------l d1hsta- ( 24 ) s-------------h d1ixca1 ( 2 ) e d1lnwa- ( 2 ) d1lvaa1 ( 377 ) d1bbya- ( 175 ) r-------------a d1ka8a- ( 1 ) d1i5za1 ( 138 ) d1i27a- ( 445 ) gplg---s---gd-------------v d1hsja1 ( 373 ) mskindindlvnatfqvkkffrdTkkk---fn-------------l d1ku9a- ( 2 ) d1lvaa2 ( 438 ) er-------------y d1fnna1 ( 277 ) iseev---L---ig-------------L d1b9ma1 ( -1 ) hqaeilltlklqqklFA---------d d1bm9a- ( 3 ) eekrsstgf---------l d1d8ja- ( 1 ) a----------------------lsgs---s---gy-------------k d1aoya- ( 1 ) mrs---s---ak-------------q d1b4aa1 ( 4 ) d1fsha- ( 12 ) ea---p---lt-------------v 60 70 80 90 100 d1d5va- ( 7 ) ysyia--litmaiq--n---ap-----------------ekkitl-ngiy d1e17a- ( 100 ) qsyae--lisqaie--s---ap-----------------ekrltl-aqiy d1gvja- ( 304 ) fkdyv--rdradlnkdkpvipAaaLAgytgsg---------piql-wQFL d1hbxg- ( 2 ) dsaitL-wqfL d1hksa- ( 47 ) pafla--klwrlvd--d-----adtnrlicwt--kd---gqsfvi-qnqa d1b6aa1 ( 396 ) lprTk--hLlnvIn--e---nfgtl----------------aFcr-rwLd d1j5ya1 ( 8 ) qerlk--sIvriLe--r---sk------------------epVsG-aqLa d1biaa1 ( 4 ) ntvpl--kLialLa--n----G------------------efhsG-eqLg d1mkma1 ( 4 ) lkkaf--eIldfIv--k---np------------------gdVsV-seIA d1on2a1 ( 3 ) tpsMe--myieqIy--m---lie-ek--------------gyArv-sdIa d1lvaa4 ( 575 ) qalg--earevIk--n---las-t---------------gpFgl-aeAr d1in4a1 ( 258 ) defdr--kILktII--e---iy-------------r---gGpVgl-naLa d1j75a- ( 113 ) nleq--kIlqVLs--d---dg------------------gpVki-gqLv d1fp2a1 ( 33 ) lkwAvemnIPniIqnhg-----------------------kpIsl-snLv d1fp1d1 ( 41 ) lnaAidlnLFeiIakatpp--------------------gafmSp-seIA d1lvaa3 ( 516 ) kkllk--dLedkYr--v---srw-----------------qPpsf-keVa d1lj9a- ( 2 ) tdilreig d1ft9a1 ( 134 ) dikq--rIAgFFi--d---hAn-ttgrqtGv--iv---sVdftv-eeIa d1jgsa- ( 7 ) lfneiiplgrlih d1hw1a1 ( 10 ) gfAee--yIieSIw--n---nrFppg-------------tiLpae-reLs d1ldda- ( 775 ) eltLq--rSlpfIe--g---MLtnl---------------gamkl-hkIh d1ldja1 ( 701 ) kniee--drkllIq--a---AIvrIMkmrk-----------vLkh-qqLl d1bjaa- ( 16 ) nekTA--tILitIa--k---kd-------------------fIta-aeVr d1hkqa- ( 20 ) tlnEk--rLVlcAAs-lIds-----------rkplpkdGyltIra-dtFA d1jhfa1 ( 5 ) tarqq--eVfdlIr--d---his-qt-------------gmpPtr-aeIa d1dp7p- ( 1 ) tvqwLl--d-----------nYet--ae---gvslpr-stLy d1o57a1 ( 6 ) sgrlv--dLtnyLl--t---hph-----------------elIpl-tfFs d1cf7a- ( 23 ) glltt--kFvslLq--e---ak-----------------dgvLdl-klAa d1cf7b- ( 72 ) rhFsm--kVcekVq--r---kg-------------------ttsy-neVA d1hsta- ( 26 ) ptyse--MIaaAir--a---eksr----------------ggSsr-qsIq d1ixca1 ( 3 ) frQLk--YFiAVAe--a---gnaaAakrLh------------vsq-ppIt d1lnwa- ( 2 ) nypvnpdlpalavfqhvr d1lvaa1 ( 377 ) gspek--iLaqiIq--e---hr------------------eGLdw-qeAA d1bbya- ( 177 ) radkq--hvldmlf--s---afe-k--------------hqyynl-kdlv d1ka8a- ( 1 ) dad--ptfdFIg--yLetlpqtsgmymgna--si---iprnyr-kyLY d1i5za1 ( 138 ) dvtg--rIaqtLl--n---lakqpdamthpd--gm---qikitr-qeIG d1i27a- ( 453 ) qVted--AVrryLt--r-----------------------kpMtt-kdLl d1hsja1 ( 403 ) nyeEi--yILnhIlrse----------------------sneiss-keIa d1ku9a- ( 2 ) iieeakkli d1lvaa2 ( 441 ) qawwq--aVtrALe--e---fhsrypl------------rpGlar-eeLr d1fnna1 ( 286 ) plHEK--LFLLAIV--r---SLkish-------------tpyItf-gdAe d1b9ma1 ( 19 ) prrIs--LLkhIal--sg--sisqGAkdAgis------------y-ksAw d1bm9a- ( 13 ) vkqra--flklymi--t---mteq----------------erlyg-lkll d1d8ja- ( 10 ) fgvla--kivnymk--t---rhqr----------gd---thpltl-deil d1aoya- ( 8 ) eelvk--afkallk--e---e-------------------kfssq-geiv d1b4aa1 ( 4 ) gqrhi--kIreIIm--s----------------------ndIetq-deLV d1fsha- ( 18 ) ksdms--aivrvmq--lp--dsgleirdrmwlkiti---anavig-advv aaa aaaaaaa a aaaa 110 120 130 140 150 d1d5va- ( 32 ) qfimdrfpfyr-e---nkq------------------------g-wqn-- d1e17a- ( 125 ) ewmvrtvpyfk-d---kgds-----------nssa--------g-wkn-- d1gvja- ( 342 ) LeLLTdksCqs-fIsWtgdgWeFk---LsdpdeVA--------rrwgkrk d1hbxg- ( 12 ) lqlLqkpqnkh-MIcwtsndGqFkL--l-qAeeVA--------rlWGirk d1hksa- ( 82 ) qfakellplny-k---hn-----------nmasfi--------r-qln-- d1b6aa1 ( 422 ) r-lges--------------------------kyl--------m-ALk-- d1j5ya1 ( 32 ) eels-------------------v----s-rqvIv--------q-dIa-- d1biaa1 ( 27 ) etlg-------------------m----s-raaIn--------k-hIq-- d1mkma1 ( 28 ) ekfn-------------------m----s-vsnAy--------k-yMv-- d1on2a1 ( 30 ) eala-------------------v----h-pssVt--------k-mVq-- d1lvaa4 ( 600 ) dalg-------------------s----s-rkyVl--------p-lLe-- d1in4a1 ( 284 ) asLg-------------------v----e-adtLs--------evyEp-- d1j75a- ( 136 ) kkCq-------------------v----p-kktLn--------q-vLy-- d1fp2a1 ( 59 ) silqvp---------------------sskignVr--------r-lMr-- d1fp1d1 ( 70 ) skLpastqh------------------sdlpnrLd--------r-mLr-- d1lvaa3 ( 541 ) gsfn-------------------l----d-pseLe--------e-lLh-- d1lj9a- ( 10 ) miaraldsisnieF--kelsLt----rgqylYLvrVcenpgiiqekIAel d1ft9a1 ( 171 ) nlIg-------------------s----s-rqtTs--------t-aLn-- d1jgsa- ( 20 ) mvnqkkdrlLneyLspl-----dIt-aaqfkVLcsIrcaacitpveLkkv d1hw1a1 ( 39 ) elIg-------------------v----t-rttLr--------e-VLq-- d1ldda- ( 802 ) sfLkitVpkd-------wgYn--r---It-lqqLe--------g-yLn-- d1ldja1 ( 732 ) geVltqlss-----------r--f---kPrvpvIk--------k-CId-- d1bjaa- ( 39 ) evhpdlg-----------------------navVn--------s-nig-- d1hkqa- ( 55 ) evfgidvk----------------h-AyaaLddAA--------t-kLfnr d1jhfa1 ( 33 ) qrlg-------------------F---rs-pnaAe--------e-hLk-- d1dp7p- ( 24 ) nhYllhSqeq-------klep--v----n-aasFg--------k-lIr-- d1o57a1 ( 31 ) erYe-------------------s----a-kssIs--------e-DLt-- d1cf7a- ( 48 ) dtLa-------------------v---rq-krrIy--------d-ITn-- d1cf7b- ( 95 ) deLvseftnsn-n---hlaad--s---aydqknIr--------r-rVy-- d1hsta- ( 52 ) kyIkshykVg-------h---------nA-dlqIk--------l-sIr-- d1ixca1 ( 34 ) rqqaLeadlg-------vvLl--e---ieltaaGh--------a-fle-- d1lnwa- ( 22 ) triqseLdcq----------rldLt-ppDVhVLklIdeqrglnLqdLgrq d1lvaa1 ( 401 ) trAs-------------------l----s-leeTr--------k-lLq-- d1bbya- ( 204 ) ditk-------------------q----p-vvylk--------e-ilk-- d1ka8a- ( 39 ) HAYlaYMeang-y---r---n--v---ls-lkmFg--------l-gLp-- d1i5za1 ( 174 ) qiVg-------------------c----s-retVG--------r-ilk-- d1i27a- ( 475 ) kkFqtkkTg--------------l----s-seqTv--------n-vLa-- d1hsja1 ( 428 ) kcseFk------------------------pyyLt--------k-ALq-- d1ku9a- ( 12 ) ielfselakih-----------glnksvgaVyAILylsdkpltisdIeel d1lvaa2 ( 471 ) sryFs---------------r--l----p-arvYq--------a-lLe-- d1fnna1 ( 315 ) esYkiVCeeyg-er--------pr----v-hsqLw--------s-yLn-- d1b9ma1 ( 50 ) daInenqLSehiLVerat-ggavLt--ryGqrLiq--------l-ydlla d1bm9a- ( 39 ) evlrsefkei------------gfk--Pn-htevy--------r-slh-- d1d8ja- ( 39 ) detqhl--------------d--i----g-lkqkq--------w-lmt-- d1aoya- ( 31 ) aalqeqgfd--------------n---in-----q--------s-kvs-- d1b4aa1 ( 27 ) drLreagf------------n--v----t-qatVs--------r-Dik-- d1fsha- ( 58 ) dwlythvegfk------------------errear--------k-yas-- aa aaaaa a aaa 160 170 180 190 200 d1d5va- ( 51 ) --------sirhnlsln---ec-fvkvprddkkp-----gkgsywtldp- d1e17a- ( 149 ) --------sirhnlslh---sk-fikvhne-atg-----ksswwmlnpeg d1gvja- ( 380 ) nkpkmnyekLSrgLryYyd-kniIhkta----------gkryVYrFvc-d d1hbxg- ( 50 ) nkpnmnydkLsraLryyyv-kniIkkvn----------gqkfvYkFvsyp d1hksa- ( 106 ) --------my----------g--fhkitsidngglrfdrdeiefshpffk d1b6aa1 ( 434 ) --------nLcdl-------gI-Vdpypplc d1j5ya1 ( 47 ) --------yLrsl-------gynIvat-p----------r--gYvLa--- d1biaa1 ( 42 ) --------tLrdw-------gvdVftv-p-g--------k--gyslp--- d1mkma1 ( 43 ) --------vleek-------gf-Vlrkk------------dkrYvpG--- d1on2a1 ( 45 ) --------kLdkd-------ey-Liye-k-y--------r--gLvl d1lvaa4 ( 615 ) --------yLdqv-------kF-Trrv---g--------d--kRvvv--- d1in4a1 ( 300 ) --------yLlqa-------gF-Lartp-------------rgriVt--- d1j75a- ( 151 ) --------rLkke-------dr-Vsspe------------paTWsig d1fp2a1 ( 77 ) --------yLAhn-------gf-Feiitk----------eeesYalt--- d1fp1d1 ( 91 ) --------lLasy-------sv-Ltsttrtie----dggaerVYglsm-- d1lvaa3 ( 556 ) --------yLvre-------gv-Lvkin------------defYwhr d1lj9a- ( 54 ) ikvd--rttAaraIkrLeeqgF-Iyrqeda------snkkikrIyAt--- d1ft9a1 ( 186 ) --------sLike-------gy-Isrqg------------rghYtIp--- d1jgsa- ( 64 ) ls--vdlgaLtrmLdrLvckgw-Verlpnp------ndkrgvlVkLt--- d1hw1a1 ( 54 ) --------rLard-------gw-Ltiqh------------gkptkVn--- d1ldda- ( 828 ) --------tLade-------gr-Lkyia------------ngsYeiv d1ldja1 ( 755 ) --------iLiek-------ey-Lervd--------gek--dTYsyla d1bjaa- ( 55 ) --------vLikk-------gL-Veksg-------------dgliit--- d1hkqa- ( 79 ) dirryvk-------------gkvvermrWVfhVkyregqgCVeLGFsptI d1jhfa1 ( 49 ) --------aLark-------gv-Ieivsg-a---------srgIrll--- d1dp7p- ( 49 ) --------sVFm--------gLrtrrlgtrg--------nskyhYygLri d1o57a1 ( 46 ) --------iIkqtFeqq---giGtLltvpga--------aGgVkYip--- d1cf7a- ( 64 ) --------vlegi-------gl-Iekks------------knsIqwk d1cf7b- ( 125 ) --------dALnvlmam---ni-Iskek-------------keIkwiglp d1hsta- ( 74 ) --------rllaa-------gv-Lkqtkgvg--------asgsfrla--- d1ixca1 ( 67 ) --------dArrilela---g----------------------------- d1lnwa- ( 62 ) c---rdkalItrkIreLegrnL-Vrrernp------sdqrsfqLfLt--- d1lvaa1 ( 416 ) --------s-aaa-------gq-Vtllrv-e--------ndlyAist d1bbya- ( 219 ) --------e------------i-gvqnvkgi--------hkntwelk--- d1ka8a- ( 65 ) --------vmLkey------glnyekrhtkq---------giqTNLtLke d1i5za1 ( 189 ) --------mLedq-------nl-Isah-------------gktIvvy d1i27a- ( 495 ) --------qIlkr-------ln-Perkmin---------dkmhfSlk--- d1hsja1 ( 443 ) --------kLkdl-------kLLskkrslq-------dertviVyVtd-- d1ku9a- ( 52 ) kis----kgnVsSLkkLeelgf-Vrkvwik----ger---knyYeav-dg d1lvaa2 ( 488 ) --------eWsre-------gr-Lqlaa-------------ntVala--- d1fnna1 ( 340 ) --------dLrek-------gI-Vetrqn-----------ttlIsIgtep d1b9ma1 ( 94 ) q------iqqkafdvlsd--------------ddalpln----------s d1bm9a- ( 63 ) --------elld------d-gi-lkqikvkke--gaklqevvlyqfk--d d1d8ja- ( 57 ) --------ealvn-------npkievid-------------gkyafk--- d1aoya- ( 48 ) --------rmltkf------g--avrtrnak--------memvyclp--- d1b4aa1 ( 47 ) --------em----------q--LvkVpman--------grykySLp--- d1fsha- ( 79 ) --------smlkh-------gf-lrhtv---nkitfseq--cyyvfgd aaaa bb bbb 210 220 230 240 250 d1d5va- ( 83 ) ---dsynmfengsfl d1e17a- ( 181 ) --------------g d1gvja- ( 418 ) -LqslLgytpeeLhamLdvk d1hbxg- ( 89 ) -eilnmsrndyihsglyssftlnsln d1hksa- ( 136 ) -rnspflldqikrk d1b6aa1 d1j5ya1 ( 66 ) -gg d1biaa1 ( 62 ) -ep d1mkma1 ( 62 ) -yklieygsfvlrrf d1on2a1 d1lvaa4 ( 633 ) -gn d1in4a1 ( 318 ) -ekAykhLkyevp d1j75a- d1fp2a1 ( 98 ) -vaSellvr--------------gsd d1fp1d1 ( 119 ) -vGkylVpdes d1lvaa3 d1lj9a- ( 92 ) ekGknvypiIvrenqhsnqvalq-------glseveisqladylvrmrkn d1ft9a1 ( 205 ) -nlvrLkaaa d1jgsa- ( 102 ) tgGaaiCeqChqlVgqdlhqeltknltadevatleyllkkvlp d1hw1a1 ( 73 ) -nfwets d1ldda- d1ldja1 d1bjaa- ( 73 ) -geAqdiisnAatlyaqenapellk d1hkqa- ( 116 ) IphLtmLhkeftsyql-------------k d1jhfa1 ( 70 ) -qee d1dp7p- ( 75 ) -ka d1o57a1 ( 74 ) -k d1cf7a- d1cf7b- d1hsta- ( 97 ) -k d1ixca1 ( 77 ) --rsgdrsraaargd d1lnwa- ( 99 ) deGlaihqhAeaisrVhdeLfapltpveqatlvhlldqclaaq d1lvaa1 d1bbya- ( 237 ) -peyrhyq d1ka8a- ( 92 ) -eSygdWlpk d1i5za1 d1i27a- ( 517 ) -e d1hsja1 ( 469 ) -tqkanIqkliseLeeyik------n d1ku9a- ( 90 ) fssikdiakrkhdliaktyedlkkleekcneeekefikqkIkgierkkis d1lvaa2 ( 506 ) -gftps d1fnna1 ( 372 ) -ldtLeavItkLIkeelr d1b9ma1 ( 114 ) -llaaisrfslqt------------s d1bm9a- ( 93 ) yeaaklykkqlkveldrckkliekalsdnf d1d8ja- ( 76 ) -pkynvr d1aoya- ( 71 ) -a------elgvptt d1b4aa1 ( 66 ) -sdqrfnplqklkr d1fsha- 260 270 280 290 300 d1d5va- d1e17a- d1gvja- d1hbxg- d1hksa- d1b6aa1 d1j5ya1 d1biaa1 d1mkma1 d1on2a1 d1lvaa4 d1in4a1 d1j75a- d1fp2a1 d1fp1d1 d1lvaa3 d1lj9a- ( 135 ) vsedwefvkkg d1ft9a1 d1jgsa- d1hw1a1 d1ldda- d1ldja1 d1bjaa- d1hkqa- d1jhfa1 d1dp7p- d1o57a1 d1cf7a- d1cf7b- d1hsta- d1ixca1 d1lnwa- d1lvaa1 d1bbya- d1ka8a- d1i5za1 d1i27a- d1hsja1 d1ku9a- ( 141 ) ekilealndld d1lvaa2 d1fnna1 d1b9ma1 d1bm9a- d1d8ja- d1aoya- d1b4aa1 d1fsha-

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

List of outliers  

SCOP PDBid
d1mzba-
d1o7fa1
d1oyia-
d1oywa1
d1p4xa1
d1p4xa2
d1p6ra-
d1pp7u-
d1puee-
d1q1ha-
d1qbja-
d1qzza1
d1r1ta-
d1r1ua-
d1r7ja-
d1repc1
d1repc2
d1rz4a1
d1s29a-
d1s3ja-
d1sd4a-
d1sfua-
d1sfxa-
d1stza1
d1t0fa1
d1t2ka-
d1t6sa1
d1t6sa2
d1t98a1
d1tbxa-
d1u2wa1
d1u5ta1
d1u5ta2
d1u5tb1
d1u5tb2
d1ub9a-
d1ucra-
d1ufma-
d1ulya-
d1ussa-
d1v3fa-
d1v4ra1
d1w1we-
d1w4ma-
d1w5sa1
d1wi9a-
d1wj5a-
d1wlqc-
d1xb4a1
d1xb4a2
d1xgsa1
d1xmaa-
d1xmka1
d1xn7a-
d1y0ua-
d1yg2a-
d1ylfa1
d1yo5c1
d1yyva1
d1z05a1
d1z1da1
d1z7ua1
d1z91a1
d1zara1
d1zh5a1
d1zyba1
d2a07f1
d2a61a1
d2axla1
d2b0la1
d2bgca1
d2cfxa1
d2cg4a1
d2coha1
d2cqka1
d2cyya1
d2d1ha1
d2dt5a1
d2esha1
d2esna1
d2etha1
d2f2ea1
d2fb1a1
d2fbha1
d2fbia1
d2fbka1
d2fmla1
d2fnaa1
d2foka1
d2foka2
d2foka3
d2frha1
d2fswa1
d2fxaa1
d2gaua1
d2hoea1
d2hr3a1
d2htsa-
d2irfg-
d2isya1
d2j5oa1
d2p4wa1

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy