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Superfamily :     Fe,Mn superoxide dismutase (SOD), N-terminal domain Class :     All alpha proteins Fold :     Long alpha-hairpin Number of Members :     4 Average Size :     89

Representative Superpose

Alignment

Matrices

Tree

PCA

CUSP

HMM (?)

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1coja1	2	A	90	A	89	PROTEIN (SUPEROXIDE DISMUTASE)	AQUIFEX PYROPHILUS	1.90	0.170
d1ix9a1	1	A	90	A	90	SUPEROXIDE DISMUTASE	ESCHERICHIA COLI	0.90	NA
d1my6a1	1	A	88	A	88	IRON (III) SUPEROXIDE DISMUTASE	THERMOSYNECHOCOCCUS ELONGATUS	1.60	0.194
d1wb8a1	4	A	92	A	89	SUPEROXIDE DISMUTASE [FE]	SULFOLOBUS SOLFATARICUS	2.30	0.167

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1coja1 ( 2 ) vhklepkdhlkPq-nLe--gisneqIephFeahYkgyVakYneiqekl d1ix9a1 ( 1 ) sytlpsLpyaydaLeph-fdkqtMeihhtkhHqtyVnnAnaaLesl d1my6a1 ( 1 ) afvqepLpfdpgaLepygmsaktLefhygkhHkgyVdnLnklTqdt d1wb8a1 ( 4 ) iqfkkyelppLpykidalepy-iskdiIdvhynghHkgyVngAnsllerl aaaaaaaaa aaaaaaaaaaaaa 60 70 80 90 100 d1coja1 ( 47 ) adq---n----fAdrskanqnyseyrelkveetfnymgVvlhelyFgmlt d1ix9a1 ( 46 ) pefa--nlpVeeLitkld---qLp-adkktvLrnnAgghAnhslfWkglk d1my6a1 ( 47 ) -ela--dksledVirtTy---g-d-aak-vgifnnAaqVwnhtffWnslk d1wb8a1 ( 53 ) ekvvkgdlq--------t--gqydiqgIirgltfninghklhalyWenma a aaaaaaaaaaaaaaaaaaa d1coja1 ( 90 ) p d1ix9a1 ( 90 ) k d1my6a1 ( 88 ) p d1wb8a1

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

List of outliers  

No outliers found

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy