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Superfamily :     GreA transcript cleavage protein, N-terminal domain Class :     All alpha proteins Fold :     Long alpha-hairpin Number of Members :     2 Average Size :     76

Alignment

Matrices

CUSP

HMM

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1grja1	2	A	79	A	78	GREA PROTEIN	ESCHERICHIA COLI	2.20	0.209
d2f23a1	3	A	77	A	75	ANTI-CLEAVAGE ANTI-GREA TRANSCRIPTION FACTOR	THERMUS THERMOPHILUS	1.60	0.206

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1grja1 ( 2 ) qaipmtlrgaeklreeldflksvrrpeiiaaiaearehgdlkenaeyhaa d2f23a1 ( 3 ) revkltkagyerlmqqLerEre-rlqeatkilqelmessddyddsgleaa bbb aaaaaaaaaaaaaaaa aaaaaaaaaaaaa aaaaaa 60 70 d1grja1 ( 52 ) reqqgfcegrikdieaklsnaqvidvtk d2f23a1 ( 52 ) kqekarIearIdslediLsrAvilee aaaaaaaaaaaaaaaaaaaabbb

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy