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Superfamily :     alpha-helical ferredoxin Class :     All alpha proteins Fold :     Globin-like Number of Members :     3 Average Size :     134

Representative Superpose

Alignment

Matrices

Tree

PCA

CUSP

HMM (?)

Structural Motifs

SCOP PDBid	Start Residue	Start Chain	End Residue	End Chain	Domain Size	Name	Source	Resolution	R-factor
d1kf6b1	106	B	243	B	138	FUMARATE REDUCTASE FLAVOPROTEIN	ESCHERICHIA COLI	2.70	0.231
d1nekb1	107	B	238	B	132	SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT	ESCHERICHIA COLI	2.60	0.247
d2bs2b1	107	B	239	B	133	QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A	WOLINELLA SUCCINOGENES	1.78	0.229

| CLUSTAL | PIR | postscript | superposed-coordinates | Alistat | MeanRms | AVGSSTEQUI | Outliers | README |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 10 20 30 40 50 d1kf6b1 ( 106 ) m-thFieSleaIkpyiigns--rtadqgtniQtpaqmakYhqfsgcincG d1nekb1 ( 107 ) m-gqfyaQyekIkpyllnngqnppa--rehlqmpeqrekLdglyecilcA d2bs2b1 ( 107 ) tgnwFngMsqrVeswihaqk-ehdiskleeriepevaqevfeLdrciecg aaaaaaaaa aaaaa 60 70 80 90 100 d1kf6b1 ( 153 ) lcyaAcpqfglnp-eFiGPAAITlAHryneDsrDhG-kkeRMaqLnsqnG d1nekb1 ( 154 ) ccStscpsfwwnpdkFIGPAGLLaAyrfLiDsrDte-tdsrLdglsdafs d2bs2b1 ( 156 ) cciaacgTkimre-dFVGAAGLNrVVrfMiDphDertdedYyelIGdddG aaaa aaaaa aaaaaaaaaaa aaaaa 110 120 130 140 d1kf6b1 ( 201 ) VwsctfvgycsevcpkhVdPaaAIqqgkveSskdfliatlkpr d1nekb1 ( 203 ) VfrchsimncvsvcpkglnPtrAIghIksmLlqrna d2bs2b1 ( 205 ) VfgcmtllachdvcpknLpLqskiayLrrkMvsvn aaaaa aaaaaaaaaaaa

Key solvent inaccessible UPPER CASE X solvent accesible lower case x alpha helix red x beta strand blue x 3 - 10 helix maroon x hydrogen bond to main chain amide bold x hydrogen bond to mainchain carbonyl underline x disulphide bond cedilla ç positive phi italic x

List of outliers  

SCOP PDBid
d1h7wa1

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Computational Approaches to Protein Science
NCBS
Bangalore, India

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 PASS2 group: 

     Prof. R. Sowdhamini
     K. Kanagarajadurai
     P. Nagarajan
     S. Kalaimathy