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Spirochaetes

 No of genomes            : 58
 No of superfamilies      : 348

Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Taxonomy [Help]

superkingdom      Bacteria
phylum      Spirochaetes
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Phylum statistics [Help]
LineageNo of members
   Order       1   
   Family       3   
   Genus       5   
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture


Domain assignments Download sequence in FASTA format
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Structural Domain architecture  [help]


The bars indicate various possible structural domain architectures displayed by the superfamily members. Structural domains were identified in the proteins by running IMPALA/HMM against a database of SCOP superfamily profiles/HMM models. The SCOP superfamily code is provided for each of the structural domains
46548 --- 51971 --- 51971

46557 --- 54534

46565 --- 49493

46565 --- 57938 --- 49493

46565 --- 57938 --- 49493 --- 49493

46589 --- 55681

46609 --- 54719

46689

46767

46785

46785 --- 47979

46785 --- 47979 --- 50037

46785 --- 53335

46911

46934 --- 54713 --- 54713

46946

46955 --- 55681

46973

46992

47060

47226 --- 47384 --- 50341

47226 --- 47384 --- 55874 --- 50341

47226 --- 55874 --- 50341

47240

47364

47364 --- 47446

47473

47661

47729

47757 --- 53335

47823 --- 56349

47831 --- 52009 --- 51621

47973

48013

48024 --- 52540

48029

48113

48150

48168 --- 51998

48329

48334 --- 52540

48403 --- 48403 --- 48403 --- 48403 --- 48403 --- 48403

48439 --- 48452

48452 --- 48439 --- 81901

48557

48592

48592 --- 52029 --- 48592

49367

49764

50129

50156 --- 50156 --- 52096

50193

50249

50249 --- 47781

50249 --- 50104

50249 --- 52540

50249 --- 52540 --- 52540

50249 --- 55681

50249 --- 55681 --- 55681

50341 --- 53335

50353

50370

50447 --- 50465

50447 --- 54980 --- 54211 --- 54980

50486

50715

50800 --- 51621 --- 52935

50814

51064

51087

51182

51206 --- 51206

51261

51283

51306

51351

51366

51412

51419 --- 50621

51556

51569

51713

51730

51735

51735 --- 48179

51735 --- 56327

51971 --- 51971 --- 55424

51971 --- 55424

51984 --- 53623 --- 53244

52080

52091

52096

52141

52166

52172

52172 --- 52540 --- 48283

52172 --- 52738

52283 --- 51735

52313

52317

52317 --- 52402 --- 54810

52335

52374

52374 --- 47323

52374 --- 47323 --- 50249

52374 --- 48163

52374 --- 52374 --- 47323

52440 --- 56059

52507

52512

52518 --- 52518 --- 52922

52518 --- 52922 --- 53323 --- 54862 --- 54862 --- 52518

52540

52540 --- 46785

52540 --- 48019

52540 --- 50331 --- 50331

52540 --- 52540

52540 --- 52540 --- 52540

52540 --- 54752

52540 --- 57774

52738

52794

52799

52821

52833

52972

53041 --- 47807 --- 53098

53067

53067 --- 52121 --- 56778

53092 --- 55920

53137

53167

53178

53223 --- 51735

53254

53271

53271 --- 53271

53328 --- 50486

53335

53383

53448

53448 --- 69765

53613

53659

53671 --- 53671

53671 --- 53671 --- 54893

53681 --- 53681

53697

53748 --- 53748

53774

53784

53807

53822

53850

53850 --- 47384 --- 55874 --- 52172

53901 --- 53901

53927

53933

53955

53955 --- 54106 --- 54106

54001

54098

54117

54197

54211

54211 --- 55060

54211 --- 55666 --- 46915 --- 54211 --- 55666 --- 54791 --- 50249

54292 --- 47741

54364 --- 55200

54534

54565

54570

54686

54736

54747 --- 46906

54768 --- 54211

54814 --- 54821

54826 --- 51604

54843

54919

54966 --- 51649

54999

55068

55120 --- 55120

55129

55174

55186 --- 55681 --- 52954

55190 --- 52374 --- 47323

55194

55205

55271 --- 53150 --- 48334 --- 52540

55282

55347 --- 69055

55594

55604

55658 --- 55653

55681

55681 --- 52954

55681 --- 52954 --- 64586

55729

55804

55874 --- 54211

55874 --- 54211 --- 56719

55909

55920

55973 --- 55973 --- 55973

55979 --- 55979 --- 55979

56047

56053 --- 56053

56059 --- 52009 --- 51621

56091 --- 50249 --- 47781 --- 52113

56091 --- 50249 --- 47781 --- 52113 --- 52113 --- 52113

56176

56176 --- 56194

56214

56219

56235

56235 --- 53697

56300

56322

56349

56420

56436

56512 --- 52218 --- 63380 --- 52343

56519 --- 56601 --- 54184

56542

56553 --- 55257 --- 47789

56601

56601 --- 54184

56645 --- 47203

56712

56719

56731

56784

56808

57774

57802

57840

63380 --- 52343

63393

63411

63411 --- 63411

63418 --- 53623 --- 53244

63491

63515

63592

63999

64005

64263

64518

68923 --- 53795

69065 --- 54768

69705 --- 50249 --- 54814 --- 54814

69796

69917

74731

74748

74982

75138 --- 53795

75445

75516 --- 46894

75620

75625

81767

81767 --- 81886

81799

81827 --- 54534

81891

81923 --- 52540 --- 52540

82004

82051

82051 --- 50447 --- 50465

82051 --- 50447 --- 52156 --- 50447

82051 --- 50447 --- 54980 --- 54211 --- 54980

82051 --- 54814

82051 --- 81271

82171 --- 50993

82220

82771 --- 46600 --- 47781

   46548      alpha-helical ferredoxin
   46557      GreA transcript cleavage protein, N-terminal domain
   46565      Chaperone J-domain
   46589      tRNA-binding arm
   46600      C-terminal UvrC-binding domain of UvrB
   46609      Fe,Mn superoxide dismutase (SOD), N-terminal domain
   46689      Homeodomain-like
   46767      Methylated DNA-protein cysteine methyltransferase, C-terminal domain
   46785      "Winged helix" DNA-binding domain
   46894      C-terminal effector domain of the bipartite response regulators
   46906      Ribosomal protein L11, C-terminal domain
   46911      Ribosomal protein S18
   46915      Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
   46934      UBA-like
   46946      S13-like H2TH domain
   46955      Putative DNA-binding domain
   46973      Enzyme IIa from lactose specific PTS, IIa-lac
   46992      Ribosomal protein S20
   47060      S15/NS1 RNA-binding domain
   47203      Acyl-CoA dehydrogenase C-terminal domain-like
   47226      Histidine-containing phosphotransfer domain, HPT domain
   47240      Ferritin-like
   47323      Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
   47364      Domain of the SRP/SRP receptor G-proteins
   47384      Homodimeric domain of signal transducing histidine kinase
   47446      Signal peptide-binding domain
   47473      EF-hand
   47661      t-snare proteins
   47729      IHF-like DNA-binding proteins
   47741      CO dehydrogenase ISP C-domain like
   47757      Chemotaxis receptor methyltransferase CheR, N-terminal domain
   47781      RuvA domain 2-like
   47789      C-terminal domain of RNA polymerase alpha subunit
   47807      5' to 3' exonuclease, C-terminal subdomain
   47823      lambda integrase-like, N-terminal domain
   47831      Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
   47973      Ribosomal protein S7
   47979      Iron-dependent represor protein, dimerization domain
   48013      Antitermination factor NusB
   48019      DNA polymerase III clamp loader subunits, C-terminal domain
   48024      N-terminal domain of DnaB helicase
   48029      FliG
   48113      Heme-dependent peroxidases
   48150      DNA-glycosylase
   48163      An anticodon-binding domain of class I aminoacyl-tRNA synthetases
   48168      R1 subunit of ribonucleotide reductase, N-terminal domain
   48179      6-phosphogluconate dehydrogenase C-terminal domain-like
   48283      FIS-like
   48329      RNA polymerase sigma subunit
   48334      DNA repair protein MutS, domain III
   48403      Ankyrin repeat
   48439      Protein prenylyltransferase
   48452      TPR-like
   48557      L-aspartase-like
   48592      GroEL equatorial domain-like chaperone equatorial domain
   49367      Superoxide reductase-like
   49493      HSP40/DnaJ peptide-binding domain
   49764      HSP20-like chaperones
   50037      C-terminal domain of transcriptional repressors
   50104      Translation proteins SH3-like domain
   50129      GroES-like
   50156      PDZ domain-like
   50193      Ribosomal protein L14
   50249      Nucleic acid-binding proteins
   50331      MOP-like
   50341      CheW-like
   50353      Cytokine
   50370      Ricin B-like lectins
   50447      Translation proteins
   50465      EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
   50486      FMT C-terminal domain-like
   50621      Alanine racemase-like, C-terminal domain
   50715      Ribosomal protein L25-like
   50800      PK beta-barrel domain-like
   50814      Lipocalins
   50993      Prolyl oligopeptidase, N-terminal domain
   51064      Head domain of nucleotide exchange factor GrpE
   51087      Outer surface protein A
   51182      RmlC-like cupins
   51206      cAMP-binding domain-like
   51261      Duplicated hybrid motif
   51283      Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
   51306      LexA/Signal peptidase
   51351      Triosephosphate isomerase (TIM)
   51366      Ribulose-phoshate binding barrel
   51412      Inosine monophosphate dehydrogenase (IMPDH)
   51419      PLP-binding barrel
   51556      Metallo-dependent hydrolases
   51569      Aldolase
   51604      Enolase C-terminal domain-like
   51621      Phosphoenolpyruvate/pyruvate domain
   51649      RuBisCo, C-terminal domain
   51713      tRNA-guanine transglycosylase
   51730      FAD-linked oxidoreductase
   51735      NAD(P)-binding Rossmann-fold domains
   51971      Nucleotide-binding domain
   51984      MurCD N-terminal domain
   51998      PFL-like glycyl radical enzymes
   52009      Phosphohistidine domain
   52029      GroEL apical domain-like
   52080      Ribosomal proteins L15p and L18e
   52091      Anti-sigma factor antagonist SpoIIaa
   52096      ClpP/crotonase
   52113      BRCT domain
   52121      Lumazine synthase
   52141      DNA glycosylase
   52156      Initiation factor IF2/eIF5b, domain 3
   52166      Ribosomal protein L4
   52172      CheY-like
   52218      Flavoproteins
   52283      Formate/glycerate dehydrogenase catalytic domain-like
   52313      Ribosomal protein S2
   52317      Class I glutamine amidotransferase-like
   52335      Methylglyoxal synthase-like
   52343      Ferredoxin reductase-like, C-terminal NADP-linked domain
   52374      Nucleotidylyl transferase
   52402      Adenine nucleotide alpha hydrolases-like
   52440      PreATP-grasp domain
   52507      DFP DNA/pantothenate metabolism flavoprotein
   52512      Phosphosugar isomerase
   52518      Thiamin diphosphate-binding fold (THDP-binding)
   52540      P-loop containing nucleotide triphosphate hydrolases
   52738      Methylesterase CheB, C-terminal domain
   52794      Enzyme IIB-cellobiose
   52799      (Phosphotyrosine protein) phosphatases II
   52821      Rhodanese/Cell cycle control phosphatase
   52833      Thioredoxin-like
   52922      TK C-terminal domain-like
   52935      Pyruvate kinase, C-terminal domain
   52954      Anticodon-binding domain of Class II aaRS
   52972      Maf/Ham1
   53041      Resolvase-like
   53067      Actin-like ATPase domain
   53092      Creatinase/prolidase N-terminal domain
   53098      Ribonuclease H-like
   53137      Translational machinery components
   53150      DNA repair protein MutS, domain II
   53167      Purine and uridine phosphorylases
   53178      Peptidyl-tRNA hydrolase
   53223      Aminoacid dehydrogenase-like, N-terminal domain
   53244      MurD-like peptide ligases, peptide-binding domain
   53254      Phosphoglycerate mutase-like
   53271      PRTase-like
   53323      Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
   53328      Formyltransferase
   53335      S-adenosyl-L-methionine-dependent methyltransferases
   53383      PLP-dependent transferases
   53448      Nucleotide-diphospho-sugar transferases
   53613      Ribokinase-like
   53623      MurD-like peptide ligases, catalytic domain
   53659      Isocitrate/Isopropylmalate dehydrogenases
   53671      Aspartate/ornithine carbamoyltransferase
   53681      Aspartate/glutamate racemase
   53697      SIS domain
   53748      Phosphoglycerate kinase
   53774      Glutaminase/Asparaginase
   53784      Phosphofructokinase
   53795      PEP carboxykinase-like
   53807      "Helical backbone" metal receptor
   53822      Periplasmic binding protein-like I
   53850      Periplasmic binding protein-like II
   53901      Thiolase-like
   53927      Cytidine deaminase-like
   53933      Microbial ribonucleases
   53955      Lysozyme-like
   54001      Cysteine proteinases
   54098      Prion-like
   54106      LysM domain
   54117      Interleukin 8-like chemokines
   54184      Penicillin-binding protein 2x (pbp-2x), c-terminal domain
   54197      HIT-like
   54211      Ribosomal protein S5 domain 2-like
   54292      2Fe-2S ferredoxin-like
   54364      Translation initiation factor IF3, N-terminal domain
   54534      FKBP-like
   54565      Ribosomal protein S16
   54570      Ribosomal protein S19
   54686      Ribosomal protein L10e
   54713      Elongation factor Ts (EF-Ts), dimerisation domain
   54719      Fe,Mn superoxide dismutase (SOD), C-terminal domain
   54736      ClpS-like
   54747      Ribosomal protein L11, N-terminal domain
   54752      RecA protein, C-terminal domain
   54768      dsRNA-binding domain-like
   54791      Eukaryotic type KH-domain (eKH-domain)
   54810      GMP synthetase C-terminal dimerisation domain
   54814      Prokaryotic type KH domain (pKH-domain)
   54821      Ribosomal protein S3 C-terminal domain
   54826      Enolase N-terminal domain-like
   54843      Ribosomal protein L22
   54862      4Fe-4S ferredoxins
   54893      Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
   54919      Nucleoside diphosphate kinases
   54966      RuBisCO, large subunit, small (N-terminal) domain
   54980      EF-G/eEF-2 domains III and V
   54999      Ribosomal protein S10
   55060      GHMP Kinase
   55068      Peptide methionine sulfoxide reductase
   55120      Pseudouridine synthase
   55129      Ribosomal protein L30p/L7e
   55174      Alpha-L RNA-binding motif
   55186      Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
   55190      Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
   55194      Ribosome recycling factor, RRF
   55200      Translation initiation factor IF3, C-terminal domain
   55205      EPT/RTPC-like
   55257      RBP11-like subunits of RNA polymerase
   55271      DNA repair protein MutS, domain I
   55282      Ribosomal protein L5
   55347      Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
   55424      FAD/NAD-linked reductases, dimerisation (C-terminal) domain
   55594      HPr-like
   55604      Glucose permease domain IIB
   55653      Ribosomal protein L9 C-domain
   55658      L9 N-domain-like
   55666      Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
   55681      Class II aaRS and biotin synthetases
   55729      Acyl-CoA N-acyltransferases (Nat)
   55804      Phoshotransferase/anion transport protein
   55874      ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
   55909      Pentein
   55920      Creatinase/aminopeptidase
   55973      S-adenosylmethionine synthetase
   55979      DNA clamp
   56047      Ribosomal protein S8
   56053      Ribosomal protein L6
   56059      Glutathione synthetase ATP-binding domain-like
   56091      DNA ligase/mRNA capping enzyme, catalytic domain
   56176      FAD-binding domain
   56194      Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
   56214      4'-phosphopantetheinyl transferase
   56219      DNase I-like
   56235      N-terminal nucleophile aminohydrolases (Ntn hydrolases)
   56300      Metallo-dependent phosphatases
   56322      ADC synthase
   56327      Lactate & malate dehydrogenases, C-terminal domain
   56349      DNA breaking-rejoining enzymes
   56420      Peptide deformylase
   56436      C-type lectin-like
   56512      Nitric oxide (NO) synthase oxygenase domain
   56519      Penicillin binding protein dimerisation domain
   56542      Substrate-binding domain of HMG-CoA reductase
   56553      Insert subdomain of RNA polymerase alpha subunit
   56601      beta-Lactamase/D-ala carboxypeptidase
   56645      Acyl-CoA dehydrogenase NM domain-like
   56712      Prokaryotic type I DNA topoisomerase
   56719      Type II DNA topoisomerase
   56731      DNA primase DnaG catalytic core
   56778      Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment
   56784      HAD-like
   56808      Ribosomal protein L1
   57774      Microbial and mitochondrial ADK, insert "zinc finger" domain
   57802      Rubredoxin-like
   57840      Ribosomal protein L36
   57938      Cysteine-rich domain of the chaperone protein DnaJ.
   63380      Riboflavin synthase domain-like
   63393      RBP12 subunit of RNA polymerase II
   63411      LuxS/MPP-like metallohydrolase
   63418      MurE/MurF N-terminal domain
   63491      BAG domain
   63515      Outer surface protein C (OspC)
   63592      Flagellar transcriptional activator FlhD
   63999      Thiamin pyrophosphokinase, catalytic domain
   64005      Undecaprenyl diphosphate synthase
   64263      Prokaryotic ribosomal protein L17
   64518      F41 fragment of flagellin
   64586      C-terminal domain of ProRS
   68923      PEP carboxykinase N-terminal domain
   69055      1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
   69065      RNase III endonuclease catalytic domain
   69705      Transcription factor NusA, N-terminal domain
   69765      2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
   69796      Thymidylate synthase-complementing protein Thy1
   69917      OMPT-like
   74731      Ribosomal protein L20
   74748      Variable surface antigen VlsE
   74982      Small protein B (SmpB)
   75138      HPr kinase/phoshatase HprK N-terminal domain
   75445      D-ribose-5-phosphate isomerase (RpiA), lid domain
   75516      Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
   75620      Polypeptide chain release factor 2 (RF2)
   75625      YebC-like
   81271      TGS-like
   81767      Pre-protein croslinking domain of SecA
   81799      Putative methyltransferase TM0872, insert domain
   81827      Porin chaperone SurA, peptide-binding domain
   81886      Helical scaffold and wing domains of SecA
   81891      tRNA CCA-adding enzyme, C-terminal domains
   81901      Cysteine rich protein B (HcpB)
   81923      Double Clp-N motif
   82004      N-utilization substance G protein NusG, insert domain
   82051      Obg GTP-binding protein N-terminal domain
   82171      Dipeptidyl peptidase IV/CD26, N-terminal domain
   82220      Tp47 lipoprotein, N-terminal domain
   82771      GIY-YIG endonuclease