•   Superfamily list
 •   Fold list
Phyletic Distribution
 •   Phylum
 •   Class
 •   Order
 •   Genus
Quick Search :
Contact
 •   Dr.R.Sowdhamini
  mini@ncbs.res.in
Home | Genomes | Tools | Search | Download | Links | Help | Lab page

Phaeophyceae

 No of genomes            : 132
 No of superfamilies      : 57

Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Taxonomy [Help]

superkingdom      Eukaryota
phylum      Phaeophyceae
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Phylum statistics [Help]
LineageNo of members
   Order       9   
   Family       22   
   Genus       83   
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture


Domain assignments Download sequence in FASTA format
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Structural Domain architecture  [help]


The bars indicate various possible structural domain architectures displayed by the superfamily members. Structural domains were identified in the proteins by running IMPALA/HMM against a database of SCOP superfamily profiles/HMM models. The SCOP superfamily code is provided for each of the structural domains
46626

46946

47113

47473

48317

48445

50193

50249

50249 --- 50104

50447

50447 --- 50465

50615 --- 52540 --- 47917

50891

51569

51735 --- 48179

52490 --- 55307

53067

53067 --- 52121 --- 56778

53137

53748

54292 --- 54862

54570

54966 --- 51649

55239

55282

56047

56553 --- 55257

56762

   46626      Cytochrome c
   46946      S13-like H2TH domain
   47113      Histone-fold
   47473      EF-hand
   47917      C-terminal domain of alpha and beta subunits of F1 ATP synthase
   48179      6-phosphogluconate dehydrogenase C-terminal domain-like
   48317      Acid phosphatase/Vanadium-dependent haloperoxidase
   48445      14-3-3 protein
   50104      Translation proteins SH3-like domain
   50193      Ribosomal protein L14
   50249      Nucleic acid-binding proteins
   50447      Translation proteins
   50465      EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
   50615      N-terminal domain of alpha and beta subunits of F1 ATP synthase
   50891      Cyclophilin (peptidylprolyl isomerase)
   51569      Aldolase
   51649      RuBisCo, C-terminal domain
   51735      NAD(P)-binding Rossmann-fold domains
   52121      Lumazine synthase
   52490      Tubulin, GTPase domain
   52540      P-loop containing nucleotide triphosphate hydrolases
   53067      Actin-like ATPase domain
   53137      Translational machinery components
   53748      Phosphoglycerate kinase
   54292      2Fe-2S ferredoxin-like
   54570      Ribosomal protein S19
   54862      4Fe-4S ferredoxins
   54966      RuBisCO, large subunit, small (N-terminal) domain
   55239      RuBisCO, small subunit
   55257      RBP11-like subunits of RNA polymerase
   55282      Ribosomal protein L5
   55307      Tubulin, C-terminal domain
   56047      Ribosomal protein S8
   56553      Insert subdomain of RNA polymerase alpha subunit
   56762      Nickel-iron hydrogenase, large subunit
   56778      Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment