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Fusobacteria

 No of genomes            : 4
 No of superfamilies      : 378

Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Taxonomy [Help]

superkingdom      Bacteria
phylum      Fusobacteria
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Phylum statistics [Help]
LineageNo of members
   Class       1   
   Order       1   
   Family       1   
   Genus       3   
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture


Domain assignments Download sequence in FASTA format
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Structural Domain architecture  [help]


The bars indicate various possible structural domain architectures displayed by the superfamily members. Structural domains were identified in the proteins by running IMPALA/HMM against a database of SCOP superfamily profiles/HMM models. The SCOP superfamily code is provided for each of the structural domains
46565 --- 57938 --- 49493 --- 49493

46589 --- 55681

46767

46785

46785 --- 75500

46911

46934 --- 54713 --- 54713

46946

46955

47060

47240

47336

47364

47364 --- 47446

47413

47729

47831 --- 52009 --- 51621

47928

47973

48013

48013 --- 53335

48024 --- 52540

48150

48168 --- 51998

48208 --- 48208

48239

48334 --- 52540

48403 --- 48403 --- 48403

48439 --- 48452

48557

48592 --- 52029 --- 48592

50156 --- 52096

50193

50249

50249 --- 46955 --- 56037 --- 46955 --- 55681 --- 54991

50249 --- 47781

50249 --- 50104

50249 --- 52540 --- 52540

50249 --- 55681

50447 --- 50465

50447 --- 54980 --- 54211 --- 54980

50475

50615 --- 52540 --- 47917

51011 --- 51011

51161

51182

51230

51230 --- 52777

51261

51283

51306

51344

51351

51366

51391

51395

51412 --- 51412

51419

51419 --- 50621

51445

51556

51569

51621 --- 50800 --- 51621 --- 52935

51703

51713

51717

51735

51735 --- 55347 --- 69055

51735 --- 56327

51971 --- 51971 --- 52833

51971 --- 51971 --- 55424 --- 52821 --- 64307

51971 --- 51971 --- 56425 --- 56425

51984 --- 53623 --- 53244

51998

52021 --- 52317

52080

52091

52096

52121

52141

52151 --- 55048

52166

52172 --- 46894

52172 --- 48283

52218

52242

52255

52283 --- 51735

52304

52313

52317

52317 --- 52402 --- 54810

52335 --- 52335 --- 64197

52374

52374 --- 47323

52374 --- 47323 --- 50249

52374 --- 48163

52374 --- 52374 --- 47323

52402

52402 --- 82829

52431

52431 --- 52467

52440 --- 56059

52440 --- 56059 --- 48108 --- 52440 --- 56059 --- 52335

52467

52507

52512

52518 --- 52922

52518 --- 52922 --- 53323 --- 54862 --- 54862

52518 --- 52922 --- 53323 --- 54862 --- 54862 --- 52518

52540

52540 --- 46785

52540 --- 52540

52540 --- 52540 --- 46600

52540 --- 52540 --- 52540

52540 --- 54752

52728

52733

52833

52833 --- 55068

52943

52972

53041 --- 47807

53067

53067 --- 52121 --- 56778

53092 --- 55920

53098

53137

53167

53178

53182

53187

53187 --- 55031

53223 --- 51735

53254

53271

53271 --- 53271

53316

53316 --- 53316

53328 --- 50486

53335

53383

53383 --- 55904 --- 52768

53448

53448 --- 51161

53474

53613

53623 --- 53244

53639

53681 --- 53681

53686

53697

53720

53748 --- 53748

53784

53790

53790 --- 69618

53800

53807

53822

53850

53850 --- 54782

53901 --- 53901

54197

54211

54211 --- 52972

54211 --- 55060

54211 --- 55666 --- 46915 --- 54211 --- 55666 --- 54791 --- 50249

54364 --- 55200

54534

54565

54570

54593

54675 --- 51690

54736

54747 --- 46906

54768 --- 54211

54814 --- 54821

54826 --- 51604

54843

54999

55008 --- 81653

55116 --- 55116

55120 --- 55120

55174

55174 --- 55186 --- 55681 --- 52954

55186

55190 --- 52374 --- 47323

55194

55205

55271 --- 53150 --- 48334 --- 52540

55282

55298

55326 --- 56042

55424 --- 52821

55469

55594

55604

55620

55620 --- 55083

55658 --- 55653

55681

55681 --- 52954

55681 --- 55826 --- 55681 --- 55681 --- 52954

55729

55804

55811

55821

55826

55831

55846

55874

55874 --- 54211

55874 --- 54211 --- 56719

55909

55920

55973 --- 55973 --- 55973

55979 --- 55979 --- 55979

56024 --- 56024

56047

56053 --- 56053

56059 --- 51246

56059 --- 52009 --- 51621

56091 --- 50249 --- 47781 --- 52113

56112

56176 --- 55103

56176 --- 56194

56214

56219

56235 --- 53271

56235 --- 53697

56281

56281 --- 52218

56322

56420

56425

56553 --- 55257 --- 47789

56601

56645 --- 47203

56645 --- 47203 --- 52467 --- 57802

56712

56719

56731

56752

56784 --- 63418 --- 53623 --- 53244

56796

56808

56821

57774

63380 --- 52343

63380 --- 63380

63411 --- 63411

63418 --- 53623 --- 53244

63520

63965

63999

64005

64182 --- 54631 --- 64182

64263

68923 --- 53795

69065 --- 54768

69500

69705 --- 50249 --- 54814 --- 54814

69742 --- 51735

69765

74650

74731

74982

75138 --- 53795 --- 75138 --- 53795

75420 --- 74942

75471

75553

75620

75625

81296

81653

81767 --- 81886

81799

81923 --- 52540 --- 52540

82004

82051

82051 --- 50447 --- 52156 --- 50447

82051 --- 50447 --- 54980 --- 54211 --- 54980

82051 --- 81271

82051 --- 82051 --- 82653

82171 --- 81761

82689

82771 --- 47781

   46565      Chaperone J-domain
   46589      tRNA-binding arm
   46600      C-terminal UvrC-binding domain of UvrB
   46767      Methylated DNA-protein cysteine methyltransferase, C-terminal domain
   46785      "Winged helix" DNA-binding domain
   46894      C-terminal effector domain of the bipartite response regulators
   46906      Ribosomal protein L11, C-terminal domain
   46911      Ribosomal protein S18
   46915      Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
   46934      UBA-like
   46946      S13-like H2TH domain
   46955      Putative DNA-binding domain
   47060      S15/NS1 RNA-binding domain
   47203      Acyl-CoA dehydrogenase C-terminal domain-like
   47240      Ferritin-like
   47323      Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
   47336      ACP-like
   47364      Domain of the SRP/SRP receptor G-proteins
   47413      lambda repressor-like DNA-binding domains
   47446      Signal peptide-binding domain
   47729      IHF-like DNA-binding proteins
   47781      RuvA domain 2-like
   47789      C-terminal domain of RNA polymerase alpha subunit
   47807      5' to 3' exonuclease, C-terminal subdomain
   47831      Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
   47917      C-terminal domain of alpha and beta subunits of F1 ATP synthase
   47928      N-terminal domain of the delta subunit of the F1F0-ATP synthase
   47973      Ribosomal protein S7
   48013      Antitermination factor NusB
   48024      N-terminal domain of DnaB helicase
   48108      Carbamoyl phosphate synthetase, large subunit connection domain
   48150      DNA-glycosylase
   48163      An anticodon-binding domain of class I aminoacyl-tRNA synthetases
   48168      R1 subunit of ribonucleotide reductase, N-terminal domain
   48208      Six-hairpin glycosyltransferases
   48239      Terpenoid cylases/Protein prenyltransferases
   48283      FIS-like
   48334      DNA repair protein MutS, domain III
   48403      Ankyrin repeat
   48439      Protein prenylyltransferase
   48452      TPR-like
   48557      L-aspartase-like
   48592      GroEL equatorial domain-like chaperone equatorial domain
   49493      HSP40/DnaJ peptide-binding domain
   50104      Translation proteins SH3-like domain
   50156      PDZ domain-like
   50193      Ribosomal protein L14
   50249      Nucleic acid-binding proteins
   50447      Translation proteins
   50465      EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
   50475      FMN-binding split barrel
   50486      FMT C-terminal domain-like
   50615      N-terminal domain of alpha and beta subunits of F1 ATP synthase
   50621      Alanine racemase-like, C-terminal domain
   50800      PK beta-barrel domain-like
   51011      alpha-Amylases, C-terminal beta-sheet domain
   51161      Trimeric LpxA-like enzymes
   51182      RmlC-like cupins
   51230      Single hybrid motif
   51246      Rudiment single hybrid motif
   51261      Duplicated hybrid motif
   51283      Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
   51306      LexA/Signal peptidase
   51344      Epsilon subunit of F1F0-ATP synthase N-terminal domain
   51351      Triosephosphate isomerase (TIM)
   51366      Ribulose-phoshate binding barrel
   51391      Thiamin phosphate synthase
   51395      FMN-linked oxidoreductases
   51412      Inosine monophosphate dehydrogenase (IMPDH)
   51419      PLP-binding barrel
   51445      (Trans)glycosidases
   51556      Metallo-dependent hydrolases
   51569      Aldolase
   51604      Enolase C-terminal domain-like
   51621      Phosphoenolpyruvate/pyruvate domain
   51690      Quinolinic acid phosphoribosyltransferase, C-terminal domain
   51703      Cobalamin (vitamin B12)-dependent enzymes
   51713      tRNA-guanine transglycosylase
   51717      Dihydropteroate synthetase-like
   51735      NAD(P)-binding Rossmann-fold domains
   51971      Nucleotide-binding domain
   51984      MurCD N-terminal domain
   51998      PFL-like glycyl radical enzymes
   52009      Phosphohistidine domain
   52021      Carbamoyl phosphate synthetase, small subunit N-terminal domain
   52029      GroEL apical domain-like
   52080      Ribosomal proteins L15p and L18e
   52091      Anti-sigma factor antagonist SpoIIaa
   52096      ClpP/crotonase
   52113      BRCT domain
   52121      Lumazine synthase
   52141      DNA glycosylase
   52151      FabD/lysophospholipase-like
   52156      Initiation factor IF2/eIF5b, domain 3
   52166      Ribosomal protein L4
   52172      CheY-like
   52218      Flavoproteins
   52242      Cobalamin (vitamin B12)-binding domain
   52255      N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase PurE
   52283      Formate/glycerate dehydrogenase catalytic domain-like
   52304      Type II 3-dehydroquinate dehydratase
   52313      Ribosomal protein S2
   52317      Class I glutamine amidotransferase-like
   52335      Methylglyoxal synthase-like
   52343      Ferredoxin reductase-like, C-terminal NADP-linked domain
   52374      Nucleotidylyl transferase
   52402      Adenine nucleotide alpha hydrolases-like
   52431      ETFP adenine nucleotide-binding domain-like
   52440      PreATP-grasp domain
   52467      DHS-like NAD/FAD-binding domain
   52507      DFP DNA/pantothenate metabolism flavoprotein
   52512      Phosphosugar isomerase
   52518      Thiamin diphosphate-binding fold (THDP-binding)
   52540      P-loop containing nucleotide triphosphate hydrolases
   52728      Fructose permease, subunit IIb
   52733      Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
   52768      Arginase/deacetylase
   52777      CoA-dependent acyltransferases
   52821      Rhodanese/Cell cycle control phosphatase
   52833      Thioredoxin-like
   52922      TK C-terminal domain-like
   52935      Pyruvate kinase, C-terminal domain
   52943      ATP syntase (F1-ATPase), gamma subunit
   52954      Anticodon-binding domain of Class II aaRS
   52972      Maf/Ham1
   53041      Resolvase-like
   53067      Actin-like ATPase domain
   53092      Creatinase/prolidase N-terminal domain
   53098      Ribonuclease H-like
   53137      Translational machinery components
   53150      DNA repair protein MutS, domain II
   53167      Purine and uridine phosphorylases
   53178      Peptidyl-tRNA hydrolase
   53182      Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
   53187      Zn-dependent exopeptidases
   53223      Aminoacid dehydrogenase-like, N-terminal domain
   53244      MurD-like peptide ligases, peptide-binding domain
   53254      Phosphoglycerate mutase-like
   53271      PRTase-like
   53316      CoA transferase
   53323      Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
   53328      Formyltransferase
   53335      S-adenosyl-L-methionine-dependent methyltransferases
   53383      PLP-dependent transferases
   53448      Nucleotide-diphospho-sugar transferases
   53474      alpha/beta-Hydrolases
   53613      Ribokinase-like
   53623      MurD-like peptide ligases, catalytic domain
   53639      AraD-like aldolase/epimerase
   53681      Aspartate/glutamate racemase
   53686      Tryptophan synthase beta subunit-like PLP-dependent enzymes
   53697      SIS domain
   53720      ALDH-like
   53748      Phosphoglycerate kinase
   53784      Phosphofructokinase
   53790      Cobalt precorrin-4 methyltransferase CbiF
   53795      PEP carboxykinase-like
   53800      Chelatase
   53807      "Helical backbone" metal receptor
   53822      Periplasmic binding protein-like I
   53850      Periplasmic binding protein-like II
   53901      Thiolase-like
   54197      HIT-like
   54211      Ribosomal protein S5 domain 2-like
   54364      Translation initiation factor IF3, N-terminal domain
   54534      FKBP-like
   54565      Ribosomal protein S16
   54570      Ribosomal protein S19
   54593      Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
   54631      CBS-domain
   54675      Quinolinic acid phosphoribosyltransferase, N-terminal domain
   54713      Elongation factor Ts (EF-Ts), dimerisation domain
   54736      ClpS-like
   54747      Ribosomal protein L11, N-terminal domain
   54752      RecA protein, C-terminal domain
   54768      dsRNA-binding domain-like
   54782      Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
   54791      Eukaryotic type KH-domain (eKH-domain)
   54810      GMP synthetase C-terminal dimerisation domain
   54814      Prokaryotic type KH domain (pKH-domain)
   54821      Ribosomal protein S3 C-terminal domain
   54826      Enolase N-terminal domain-like
   54843      Ribosomal protein L22
   54862      4Fe-4S ferredoxins
   54980      EF-G/eEF-2 domains III and V
   54991      Anticodon-binding domain of PheRS
   54999      Ribosomal protein S10
   55008      Metal-binding domain
   55031      Bacterial exopeptidase dimerisation domain
   55048      Probable ACP-binding domain of malonyl-CoA ACP transacylase
   55060      GHMP Kinase
   55068      Peptide methionine sulfoxide reductase
   55083      6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
   55103      FAD-linked oxidases, C-terminal domain
   55116      Formiminotransferase domain of formiminotransferase-cyclodeaminase.
   55120      Pseudouridine synthase
   55174      Alpha-L RNA-binding motif
   55186      Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
   55190      Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
   55194      Ribosome recycling factor, RRF
   55200      Translation initiation factor IF3, C-terminal domain
   55205      EPT/RTPC-like
   55257      RBP11-like subunits of RNA polymerase
   55271      DNA repair protein MutS, domain I
   55282      Ribosomal protein L5
   55298      YjgF-like
   55326      Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
   55347      Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
   55424      FAD/NAD-linked reductases, dimerisation (C-terminal) domain
   55469      NADH oxidase/flavin reductase
   55594      HPr-like
   55604      Glucose permease domain IIB
   55620      Tetrahydrobiopterin biosynthesis enzymes-like
   55653      Ribosomal protein L9 C-domain
   55658      L9 N-domain-like
   55666      Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
   55681      Class II aaRS and biotin synthetases
   55729      Acyl-CoA N-acyltransferases (Nat)
   55804      Phoshotransferase/anion transport protein
   55811      Nudix
   55821      YrdC/RibB
   55826      Hypothetical protein HI1434 (YbaK homologue)
   55831      Thymidylate synthase/dCMP hydroxymethylase
   55846      N-acetylmuramoyl-L-alanine amidase-like
   55874      ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
   55904      Ornithine decarboxylase C-terminal domain
   55909      Pentein
   55920      Creatinase/aminopeptidase
   55973      S-adenosylmethionine synthetase
   55979      DNA clamp
   56024      Phospholipase D/nuclease
   56037      B3/B4 domain of PheRS, PheT
   56042      Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
   56047      Ribosomal protein S8
   56053      Ribosomal protein L6
   56059      Glutathione synthetase ATP-binding domain-like
   56091      DNA ligase/mRNA capping enzyme, catalytic domain
   56112      Protein kinase-like (PK-like)
   56176      FAD-binding domain
   56194      Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
   56214      4'-phosphopantetheinyl transferase
   56219      DNase I-like
   56235      N-terminal nucleophile aminohydrolases (Ntn hydrolases)
   56281      Metallo-hydrolase/oxidoreductase
   56322      ADC synthase
   56327      Lactate & malate dehydrogenases, C-terminal domain
   56420      Peptide deformylase
   56425      Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
   56553      Insert subdomain of RNA polymerase alpha subunit
   56601      beta-Lactamase/D-ala carboxypeptidase
   56645      Acyl-CoA dehydrogenase NM domain-like
   56712      Prokaryotic type I DNA topoisomerase
   56719      Type II DNA topoisomerase
   56731      DNA primase DnaG catalytic core
   56752      D-aminoacid aminotransferase-like PLP-dependent enzymes
   56778      Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment
   56784      HAD-like
   56796      Dehydroquinate synthase-like
   56808      Ribosomal protein L1
   56821      Prismane protein-like
   57774      Microbial and mitochondrial ADK, insert "zinc finger" domain
   57802      Rubredoxin-like
   57938      Cysteine-rich domain of the chaperone protein DnaJ.
   63380      Riboflavin synthase domain-like
   63411      LuxS/MPP-like metallohydrolase
   63418      MurE/MurF N-terminal domain
   63520      PTS-regulatory domain, PRD
   63965      Precorrin-8x methylmutase
   63999      Thiamin pyrophosphokinase, catalytic domain
   64005      Undecaprenyl diphosphate synthase
   64182      DHH phosphoesterases
   64197      AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
   64263      Prokaryotic ribosomal protein L17
   64307      SirA-like
   68923      PEP carboxykinase N-terminal domain
   69055      1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
   69065      RNase III endonuclease catalytic domain
   69500      D-Tyr tRNAtyr deacylase
   69618      Uroporphyrinogen III synthase (U3S, HemD)
   69705      Transcription factor NusA, N-terminal domain
   69742      Glutamyl tRNA-reductase catalytic, N-terminal domain
   69765      2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
   74650      Galactose mutarotase-like
   74731      Ribosomal protein L20
   74942      YhbC-like, C-terminal domain
   74982      Small protein B (SmpB)
   75138      HPr kinase/phoshatase HprK N-terminal domain
   75420      YhbC-like, N-terminal domain
   75471      YhbY-like
   75500      Putative transcriptional regulator TM1602, C-terminal domain
   75553      Smc hinge domain
   75620      Polypeptide chain release factor 2 (RF2)
   75625      YebC-like
   81271      TGS-like
   81296      E set domains
   81653      Calcium ATPase, transduction domain A
   81761      X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain
   81767      Pre-protein croslinking domain of SecA
   81799      Putative methyltransferase TM0872, insert domain
   81886      Helical scaffold and wing domains of SecA
   81923      Double Clp-N motif
   82004      N-utilization substance G protein NusG, insert domain
   82051      Obg GTP-binding protein N-terminal domain
   82171      Dipeptidyl peptidase IV/CD26, N-terminal domain
   82653      Probable GTPase Der, C-terminal domain
   82689      Mechanosensitive channel protein MscS (YggB), C-terminal domain
   82771      GIY-YIG endonuclease
   82829      Putative cell cycle protein MesJ, middle and C-terminal domain