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Chlorophyta

 No of genomes            : 225
 No of superfamilies      : 201

Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Taxonomy [Help]

superkingdom      Eukaryota
kingdom      Viridiplantae
phylum      Chlorophyta
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Phylum statistics [Help]
LineageNo of members
   Class       6   
   Order       19   
   Family       33   
   Genus       79   
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture


Domain assignments Download sequence in FASTA format
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Structural Domain architecture  [help]


The bars indicate various possible structural domain architectures displayed by the superfamily members. Structural domains were identified in the proteins by running IMPALA/HMM against a database of SCOP superfamily profiles/HMM models. The SCOP superfamily code is provided for each of the structural domains
46458

46609 --- 54719

46626

46785

46911

46938 --- 52087

46946

47095

47113

47240

47364 --- 47446

47473

47473 --- 47473

47565

47874

47954 --- 47954

47973

48113

48168 --- 51998

48225

48230 --- 50005 --- 49863

48371

48403

48445

48473

48508

48557

48576

48592 --- 52029 --- 48592

48592 --- 54849 --- 52029 --- 48592

49265 --- 49265 --- 49265

49417 --- 81296

49441 --- 51246

49447

49452

49503

49503 --- 49503 --- 49503 --- 49503 --- 49503 --- 49503

49503 --- 49503 --- 49503 --- 49503 --- 49503 --- 49503 --- 49785 --- 49785

49562

49562 --- 56112 --- 47473 --- 47473

49611

49764

49785 --- 49303 --- 51445 --- 49303 --- 49994

49899 --- 63887

50022

50090

50193

50203 --- 54334

50249

50249 --- 50104

50324

50447

50447 --- 50465

50447 --- 54980 --- 54211 --- 54980

50615 --- 52540 --- 47917

50891

50978

50978 --- 50978 --- 50978

51064

51069

51069 --- 51069

51161

51206 --- 51206 --- 56112

51230 --- 47005 --- 52777

51344

51395 --- 69336

51430

51445

51569

51604

51621

51649

51717

51735

51735 --- 48179

51735 --- 56327

51971 --- 51971 --- 51971 --- 55424

52075

52080

52096

52096 --- 52096

52096 --- 52096 --- 51294 --- 52096

52166

52283 --- 51735 --- 52467

52313

52402 --- 52833

52425 --- 48173

52490 --- 55307

52518

52518 --- 52467 --- 52518

52518 --- 52922

52540

52540 --- 47917

52540 --- 52540

52540 --- 54752

52799 --- 52799

52833

52833 --- 52833

52833 --- 52833 --- 52833

52943

53036 --- 55287

53056

53067

53067 --- 52121 --- 56778

53098

53137

53223

53223 --- 51735

53383

53448 --- 51161

53649

53649 --- 64158 --- 53649

53686

53748 --- 53748

53800

53807

53850 --- 53850 --- 53850

53901 --- 53901

53920 --- 48674

54076

54211

54236

54236 --- 47031 --- 50729

54236 --- 54236 --- 54236 --- 54236 --- 54236 --- 54236

54292

54570

54648

54690

54695 --- 47454

54736

54814 --- 54821

54821

54826 --- 51604

54919

54928 --- 54928 --- 54928 --- 54928 --- 63570

54966

54966 --- 51649

55116 --- 55116

55120 --- 55120

55124 --- 56014 --- 55124 --- 56014

55174

55239

55271 --- 52540

55282

55307

55326 --- 56042

55481 --- 53137 --- 55315

55550 --- 50729

55594

55608

55620 --- 55620

55770

55797

55811

55856 --- 55856

55895

55920 --- 46785

55945 --- 55945

55973 --- 55973

55979 --- 55979

56047

56053

56112

56281

56300

56524 --- 55856 --- 55856 --- 63380 --- 52343

56553 --- 55257

56553 --- 55257 --- 47789

56601

56634

56762

56808

56983 --- 56983

57567 --- 57567 --- 57567 --- 57196

57667 --- 57667

57716 --- 57716

57840

63380 --- 52343

64153 --- 53613

64234

69012 --- 55874

69322

69737

69742 --- 51735

74731

75520 --- 49447

81653

82051 --- 50447 --- 50465

82199 --- 51045

82282 --- 51717 --- 47644 --- 52242 --- 56507

   46458      Globin-like
   46609      Fe,Mn superoxide dismutase (SOD), N-terminal domain
   46626      Cytochrome c
   46785      "Winged helix" DNA-binding domain
   46911      Ribosomal protein S18
   46938      N-terminal domain of phosphatidylinositol transfer protein sec14p
   46946      S13-like H2TH domain
   47005      Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
   47031      Second domain of FERM
   47095      HMG-box
   47113      Histone-fold
   47240      Ferritin-like
   47364      Domain of the SRP/SRP receptor G-proteins
   47446      Signal peptide-binding domain
   47454      A DNA-binding domain in eukaryotic transcription factors
   47473      EF-hand
   47565      Insect pheromon/odorant-binding proteins
   47644      Methionine synthase domain
   47789      C-terminal domain of RNA polymerase alpha subunit
   47874      Annexin
   47917      C-terminal domain of alpha and beta subunits of F1 ATP synthase
   47954      Cyclin-like
   47973      Ribosomal protein S7
   48113      Heme-dependent peroxidases
   48168      R1 subunit of ribonucleotide reductase, N-terminal domain
   48173      Cryptochrome/photolyase FAD-binding domain
   48179      6-phosphogluconate dehydrogenase C-terminal domain-like
   48225      Seven-hairpin glycosyltransferases
   48230      Chondroitin AC/alginate lyase
   48371      ARM repeat
   48403      Ankyrin repeat
   48445      14-3-3 protein
   48473      Phosphoinositide-binding clathrin adaptor, N-terminal domain
   48508      Nuclear receptor ligand-binding domain
   48557      L-aspartase-like
   48576      Terpenoid synthases
   48592      GroEL equatorial domain-like chaperone equatorial domain
   48674      Fe-only hydrogenase smaller subunit
   49265      Fibronectin type III
   49303      beta-Galactosidase/glucuronidase domain
   49417      p53-like transcription factors
   49441      Cytochrome f, large domain
   49447      Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
   49452      Starch-binding domain
   49503      Cupredoxins
   49562      C2 domain (Calcium/lipid-binding domain, CaLB)
   49611      Viral coat and capsid proteins
   49764      HSP20-like chaperones
   49785      Galactose-binding domain-like
   49863      Hyaluronate lyase-like, C-terminal domain
   49899      Concanavalin A-like lectins/glucanases
   49994      beta-Galactosidase, domain 5
   50005      Hyaluronate lyase-like, central domain
   50022      ISP domain
   50090      Electron transport accessory proteins
   50104      Translation proteins SH3-like domain
   50193      Ribosomal protein L14
   50203      Bacterial enterotoxins
   50249      Nucleic acid-binding proteins
   50324      Inorganic pyrophosphatase
   50447      Translation proteins
   50465      EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
   50615      N-terminal domain of alpha and beta subunits of F1 ATP synthase
   50729      PH domain-like
   50891      Cyclophilin (peptidylprolyl isomerase)
   50978      WD40-repeat
   51045      WW domain
   51064      Head domain of nucleotide exchange factor GrpE
   51069      Carbonic anhydrase
   51161      Trimeric LpxA-like enzymes
   51206      cAMP-binding domain-like
   51230      Single hybrid motif
   51246      Rudiment single hybrid motif
   51294      Hedgehog/intein (Hint) domain
   51344      Epsilon subunit of F1F0-ATP synthase N-terminal domain
   51395      FMN-linked oxidoreductases
   51430      NAD(P)-linked oxidoreductase
   51445      (Trans)glycosidases
   51569      Aldolase
   51604      Enolase C-terminal domain-like
   51621      Phosphoenolpyruvate/pyruvate domain
   51649      RuBisCo, C-terminal domain
   51717      Dihydropteroate synthetase-like
   51735      NAD(P)-binding Rossmann-fold domains
   51971      Nucleotide-binding domain
   51998      PFL-like glycyl radical enzymes
   52029      GroEL apical domain-like
   52075      Outer arm dynein light chain 1
   52080      Ribosomal proteins L15p and L18e
   52087      C-terminal domain of phosphatidylinositol transfer protein sec14p
   52096      ClpP/crotonase
   52121      Lumazine synthase
   52166      Ribosomal protein L4
   52242      Cobalamin (vitamin B12)-binding domain
   52283      Formate/glycerate dehydrogenase catalytic domain-like
   52313      Ribosomal protein S2
   52343      Ferredoxin reductase-like, C-terminal NADP-linked domain
   52402      Adenine nucleotide alpha hydrolases-like
   52425      Cryptochrome/photolyase, N-terminal domain
   52467      DHS-like NAD/FAD-binding domain
   52490      Tubulin, GTPase domain
   52518      Thiamin diphosphate-binding fold (THDP-binding)
   52540      P-loop containing nucleotide triphosphate hydrolases
   52777      CoA-dependent acyltransferases
   52799      (Phosphotyrosine protein) phosphatases II
   52833      Thioredoxin-like
   52922      TK C-terminal domain-like
   52943      ATP syntase (F1-ATPase), gamma subunit
   53036      Eukaryotic RPB5 N-terminal domain
   53056      beta-carbonic anhydrase, cab
   53067      Actin-like ATPase domain
   53098      Ribonuclease H-like
   53137      Translational machinery components
   53223      Aminoacid dehydrogenase-like, N-terminal domain
   53383      PLP-dependent transferases
   53448      Nucleotide-diphospho-sugar transferases
   53613      Ribokinase-like
   53649      Alkaline phosphatase-like
   53686      Tryptophan synthase beta subunit-like PLP-dependent enzymes
   53748      Phosphoglycerate kinase
   53800      Chelatase
   53807      "Helical backbone" metal receptor
   53850      Periplasmic binding protein-like II
   53901      Thiolase-like
   53920      Fe-only hydrogenase
   54076      RNase A-like
   54211      Ribosomal protein S5 domain 2-like
   54236      Ubiquitin-like
   54292      2Fe-2S ferredoxin-like
   54334      Superantigen toxins, C-terminal domain
   54570      Ribosomal protein S19
   54648      Dynein light chain 8 (DLC8)
   54690      Molybdopterin synthase subunit MoaE
   54695      POZ domain
   54719      Fe,Mn superoxide dismutase (SOD), C-terminal domain
   54736      ClpS-like
   54752      RecA protein, C-terminal domain
   54814      Prokaryotic type KH domain (pKH-domain)
   54821      Ribosomal protein S3 C-terminal domain
   54826      Enolase N-terminal domain-like
   54849      GroEL-intermediate domain like
   54919      Nucleoside diphosphate kinases
   54928      RNA-binding domain, RBD
   54966      RuBisCO, large subunit, small (N-terminal) domain
   54980      EF-G/eEF-2 domains III and V
   55116      Formiminotransferase domain of formiminotransferase-cyclodeaminase.
   55120      Pseudouridine synthase
   55124      Sulfite reductase, domains 1 and 3
   55174      Alpha-L RNA-binding motif
   55239      RuBisCO, small subunit
   55257      RBP11-like subunits of RNA polymerase
   55271      DNA repair protein MutS, domain I
   55282      Ribosomal protein L5
   55287      RPB5-like RNA polymerase subunit
   55307      Tubulin, C-terminal domain
   55315      L30e-like
   55326      Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
   55424      FAD/NAD-linked reductases, dimerisation (C-terminal) domain
   55481      N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
   55550      SH2 domain
   55594      HPr-like
   55608      Homing endonucleases
   55620      Tetrahydrobiopterin biosynthesis enzymes-like
   55770      Profilin (actin-binding protein)
   55797      PR-1-like
   55811      Nudix
   55856      Cytochrome b5
   55874      ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
   55895      Ribonuclease Rh-like
   55920      Creatinase/aminopeptidase
   55945      TATA-box binding protein-like
   55973      S-adenosylmethionine synthetase
   55979      DNA clamp
   56014      Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
   56042      Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
   56047      Ribosomal protein S8
   56053      Ribosomal protein L6
   56112      Protein kinase-like (PK-like)
   56281      Metallo-hydrolase/oxidoreductase
   56300      Metallo-dependent phosphatases
   56327      Lactate & malate dehydrogenases, C-terminal domain
   56507      Methionine synthase activation domain-like
   56524      Sulfite oxidase, middle catalytic domain
   56553      Insert subdomain of RNA polymerase alpha subunit
   56601      beta-Lactamase/D-ala carboxypeptidase
   56634      Heme-linked catalases
   56762      Nickel-iron hydrogenase, large subunit
   56778      Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment
   56808      Ribosomal protein L1
   56983      Viral glycoprotein, central and dimerisation domains
   57196      EGF/Laminin
   57567      Serine proterase inhibitors
   57667      C2H2 and C2HC zinc fingers
   57716      Glucocorticoid receptor-like (DNA-binding domain)
   57840      Ribosomal protein L36
   63380      Riboflavin synthase domain-like
   63570      PABC (PABP) domain
   63887      P-domain of calnexin/calreticulin
   64153      YjeF N-terminal domain-like
   64158      2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
   64234      Photosystem I subunit PsaD
   69012      alpha-ketoacid dehydrogenase kinase, N-terminal domain
   69322      Tricorn protease N-terminal domain
   69336      Alpha subunit of glutamate synthase, C-terminal domain
   69737      Urease metallochaperone UreE, C-terminal domain
   69742      Glutamyl tRNA-reductase catalytic, N-terminal domain
   74731      Ribosomal protein L20
   75520      Clathrin coat assembly domain
   81296      E set domains
   81653      Calcium ATPase, transduction domain A
   82051      Obg GTP-binding protein N-terminal domain
   82199      SET domain
   82282      Betaine-homocysteine S-methyltransferase