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Aquificae

 No of genomes            : 3
 No of superfamilies      : 395

Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Taxonomy [Help]

superkingdom      Bacteria
phylum      Aquificae
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Phylum statistics [Help]
LineageNo of members
   Order       1   
   Family       1   
   Genus       2   
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture


Domain assignments Download sequence in FASTA format
Taxonomy       Phylum Statistics       Domain assignments       Domain architecture
Structural Domain architecture  [help]


The bars indicate various possible structural domain architectures displayed by the superfamily members. Structural domains were identified in the proteins by running IMPALA/HMM against a database of SCOP superfamily profiles/HMM models. The SCOP superfamily code is provided for each of the structural domains
46458

46548 --- 51971 --- 51971

46565 --- 57938 --- 49493 --- 49493

46579

46589 --- 55681

46609 --- 54719

46626

46689

46767

46911

46934 --- 54713 --- 54713

46946

46992

47060

47240 --- 51294 --- 47240

47336

47364 --- 47446

47413 --- 55234

47648 --- 52418

47729

47802 --- 81301

47973

48013

48019

48024 --- 52540

48029

48150

48168 --- 51998

48329

48334 --- 52540

48439 --- 47364

48452 --- 48439 --- 48452

48452 --- 53955

48557

48592 --- 52029 --- 48592

48600 --- 55021

49503 --- 49503 --- 49503

49764

49777

50129

50129 --- 51735

50156 --- 52096

50193

50249

50249 --- 46955 --- 56037 --- 46955 --- 55681 --- 54991

50249 --- 50104

50249 --- 52540

50249 --- 52540 --- 52540

50249 --- 54814 --- 54814

50249 --- 55681

50324

50475

50494 --- 50156 --- 50156

50615 --- 52540 --- 47917

50800 --- 47364 --- 52540

50993

51161

51206

51206 --- 46785

51230

51283

51306

51338 --- 51556

51351

51366

51391

51395

51412

51419

51419 --- 50621

51556

51569

51658

51713

51717

51726

51730

51735

51735 --- 48179

51735 --- 52210

51735 --- 55347

51735 --- 56327

51971 --- 51735 --- 55124 --- 56014 --- 55124 --- 56014

51971 --- 51971 --- 55424

51971 --- 54373

51971 --- 56425 --- 46977

51984 --- 53623 --- 53244

52021 --- 52317

52080

52091

52096

52121

52151 --- 55048

52166

52172 --- 46894

52172 --- 48283

52172 --- 52540

52172 --- 52540 --- 48283

52255

52283

52283 --- 51735

52283 --- 51735 --- 55021

52313

52317

52317 --- 52402 --- 54810

52335 --- 64197

52374

52374 --- 47323

52374 --- 48163

52374 --- 50677 --- 52374

52374 --- 52374

52374 --- 52374 --- 47323

52402 --- 69864

52440 --- 56059

52440 --- 56059 --- 48108

52440 --- 56059 --- 51246

52440 --- 56059 --- 52335

52467

52499

52507

52518 --- 52467 --- 52518

52518 --- 52518 --- 52922

52540

52540 --- 52540 --- 46600

52540 --- 52540 --- 56712

52540 --- 54752

52768

52788

52821

52821 --- 52821

52833

52833 --- 52833

52943

52949 --- 53187

52972

53041 --- 47807

53067

53067 --- 52121 --- 56778

53092 --- 55920

53098

53137

53167

53178

53218

53223 --- 51735

53254

53271

53271 --- 53271

53323 --- 52518 --- 52922

53328

53328 --- 50486

53335

53383

53448 --- 51161

53448 --- 51161 --- 53738 --- 53738 --- 53738

53474

53590

53613

53639

53659

53671 --- 53671

53681 --- 53681

53686

53697

53706 --- 50692

53732 --- 52016

53738 --- 53738 --- 53738

53748 --- 53748

53756

53784

53790

53800

53807

53850

53850 --- 54782

53901 --- 53901

53955

54106 --- 54106 --- 54106

54197

54211

54211 --- 55060

54211 --- 55666 --- 46915 --- 54211 --- 55666 --- 50249 --- 50249 --- 50249

54292 --- 46548

54292 --- 54862 --- 53706 --- 53706

54364 --- 55200

54368 --- 55931

54506 --- 54506

54565

54570

54631 --- 54631

54675 --- 51690

54736

54747 --- 46906

54768 --- 54211

54814 --- 54821

54826 --- 51604

54843

54862 --- 54862

54913

54913 --- 54913

54919

54975 --- 55821

54999

55008

55040

55083

55120 --- 55120

55174

55186 --- 55681 --- 52954

55190 --- 52374 --- 47323

55194

55205

55248

55271 --- 53150 --- 48334 --- 52540

55282

55298

55326 --- 55326

55326 --- 56042

55347 --- 69055

55620

55658 --- 55653

55681

55681 --- 52954

55681 --- 55826 --- 55681 --- 55681 --- 52954

55718

55729

55781 --- 52540 --- 48283

55785 --- 48283

55811

55821

55874 --- 54211

55874 --- 54211 --- 56719 --- 56719

55920

55973 --- 55973 --- 55973

55979 --- 55979 --- 55979

56047

56053 --- 56053

56059 --- 51246

56059 --- 52009 --- 51621

56059 --- 52210

56091

56091 --- 50249 --- 47781 --- 52113

56176 --- 55103

56176 --- 56194

56214

56235 --- 51395 --- 51395 --- 69336

56235 --- 53271

56235 --- 53697

56281

56317

56317 --- 52402

56322

56420

56519 --- 56601

56553 --- 55257 --- 47789

56655

56712

56719

56731

56752

56762

56770

56784

56796

56808

57716

57774

63380 --- 52343

63380 --- 63380

63411 --- 63411

63418 --- 53623 --- 53244

63848

63882 --- 53218 --- 63867

63892

64005

64153 --- 53613

64167

64182 --- 54631 --- 81891

64263

64307

64325

69065

69065 --- 54768

69500

69572

69742 --- 51735

69754

69765

69796

74731

74982

75304

75420 --- 74942

75620

75625

81296

81653

81767

81799

81827

81923 --- 52540 --- 52540

82051

82051 --- 50447 --- 50465

82051 --- 50447 --- 52156 --- 50447

82051 --- 50447 --- 54980 --- 54211 --- 54980

82051 --- 81271

82679

82689

82693 --- 82714 --- 82693 --- 82693 --- 82714 --- 82693

   46458      Globin-like
   46548      alpha-helical ferredoxin
   46565      Chaperone J-domain
   46579      Prefoldin
   46589      tRNA-binding arm
   46600      C-terminal UvrC-binding domain of UvrB
   46609      Fe,Mn superoxide dismutase (SOD), N-terminal domain
   46626      Cytochrome c
   46689      Homeodomain-like
   46767      Methylated DNA-protein cysteine methyltransferase, C-terminal domain
   46785      "Winged helix" DNA-binding domain
   46894      C-terminal effector domain of the bipartite response regulators
   46906      Ribosomal protein L11, C-terminal domain
   46911      Ribosomal protein S18
   46915      Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
   46934      UBA-like
   46946      S13-like H2TH domain
   46955      Putative DNA-binding domain
   46977      Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
   46992      Ribosomal protein S20
   47060      S15/NS1 RNA-binding domain
   47240      Ferritin-like
   47323      Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
   47336      ACP-like
   47364      Domain of the SRP/SRP receptor G-proteins
   47413      lambda repressor-like DNA-binding domains
   47446      Signal peptide-binding domain
   47648      Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
   47729      IHF-like DNA-binding proteins
   47781      RuvA domain 2-like
   47789      C-terminal domain of RNA polymerase alpha subunit
   47802      DNA polymerase beta, N-terminal domain-like
   47807      5' to 3' exonuclease, C-terminal subdomain
   47917      C-terminal domain of alpha and beta subunits of F1 ATP synthase
   47973      Ribosomal protein S7
   48013      Antitermination factor NusB
   48019      DNA polymerase III clamp loader subunits, C-terminal domain
   48024      N-terminal domain of DnaB helicase
   48029      FliG
   48108      Carbamoyl phosphate synthetase, large subunit connection domain
   48150      DNA-glycosylase
   48163      An anticodon-binding domain of class I aminoacyl-tRNA synthetases
   48168      R1 subunit of ribonucleotide reductase, N-terminal domain
   48179      6-phosphogluconate dehydrogenase C-terminal domain-like
   48283      FIS-like
   48329      RNA polymerase sigma subunit
   48334      DNA repair protein MutS, domain III
   48439      Protein prenylyltransferase
   48452      TPR-like
   48557      L-aspartase-like
   48592      GroEL equatorial domain-like chaperone equatorial domain
   48600      Chorismate mutase II
   49493      HSP40/DnaJ peptide-binding domain
   49503      Cupredoxins
   49764      HSP20-like chaperones
   49777      PEBP-like
   50104      Translation proteins SH3-like domain
   50129      GroES-like
   50156      PDZ domain-like
   50193      Ribosomal protein L14
   50249      Nucleic acid-binding proteins
   50324      Inorganic pyrophosphatase
   50447      Translation proteins
   50465      EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
   50475      FMN-binding split barrel
   50486      FMT C-terminal domain-like
   50494      Trypsin-like serine proteases
   50615      N-terminal domain of alpha and beta subunits of F1 ATP synthase
   50621      Alanine racemase-like, C-terminal domain
   50677      ValRS/IleRS/LeuRS editing domain
   50692      ADC-like
   50800      PK beta-barrel domain-like
   50993      Prolyl oligopeptidase, N-terminal domain
   51161      Trimeric LpxA-like enzymes
   51206      cAMP-binding domain-like
   51230      Single hybrid motif
   51246      Rudiment single hybrid motif
   51283      Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
   51294      Hedgehog/intein (Hint) domain
   51306      LexA/Signal peptidase
   51338      Composite domain of metallo-dependent hydrolases
   51351      Triosephosphate isomerase (TIM)
   51366      Ribulose-phoshate binding barrel
   51391      Thiamin phosphate synthase
   51395      FMN-linked oxidoreductases
   51412      Inosine monophosphate dehydrogenase (IMPDH)
   51419      PLP-binding barrel
   51556      Metallo-dependent hydrolases
   51569      Aldolase
   51604      Enolase C-terminal domain-like
   51621      Phosphoenolpyruvate/pyruvate domain
   51658      Xylose isomerase-like
   51690      Quinolinic acid phosphoribosyltransferase, C-terminal domain
   51713      tRNA-guanine transglycosylase
   51717      Dihydropteroate synthetase-like
   51726      Uroporphyrinogen decarboxylase, UROD
   51730      FAD-linked oxidoreductase
   51735      NAD(P)-binding Rossmann-fold domains
   51971      Nucleotide-binding domain
   51984      MurCD N-terminal domain
   51998      PFL-like glycyl radical enzymes
   52009      Phosphohistidine domain
   52016      Aconitase
   52021      Carbamoyl phosphate synthetase, small subunit N-terminal domain
   52029      GroEL apical domain-like
   52080      Ribosomal proteins L15p and L18e
   52091      Anti-sigma factor antagonist SpoIIaa
   52096      ClpP/crotonase
   52113      BRCT domain
   52121      Lumazine synthase
   52151      FabD/lysophospholipase-like
   52156      Initiation factor IF2/eIF5b, domain 3
   52166      Ribosomal protein L4
   52172      CheY-like
   52210      Succinyl-CoA synthetase domains
   52255      N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase PurE
   52283      Formate/glycerate dehydrogenase catalytic domain-like
   52313      Ribosomal protein S2
   52317      Class I glutamine amidotransferase-like
   52335      Methylglyoxal synthase-like
   52343      Ferredoxin reductase-like, C-terminal NADP-linked domain
   52374      Nucleotidylyl transferase
   52402      Adenine nucleotide alpha hydrolases-like
   52418      Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
   52440      PreATP-grasp domain
   52467      DHS-like NAD/FAD-binding domain
   52499      Cysteine hydrolase
   52507      DFP DNA/pantothenate metabolism flavoprotein
   52518      Thiamin diphosphate-binding fold (THDP-binding)
   52540      P-loop containing nucleotide triphosphate hydrolases
   52768      Arginase/deacetylase
   52788      Phosphotyrosine protein phosphatases I
   52821      Rhodanese/Cell cycle control phosphatase
   52833      Thioredoxin-like
   52922      TK C-terminal domain-like
   52943      ATP syntase (F1-ATPase), gamma subunit
   52949      Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
   52954      Anticodon-binding domain of Class II aaRS
   52972      Maf/Ham1
   53041      Resolvase-like
   53067      Actin-like ATPase domain
   53092      Creatinase/prolidase N-terminal domain
   53098      Ribonuclease H-like
   53137      Translational machinery components
   53150      DNA repair protein MutS, domain II
   53167      Purine and uridine phosphorylases
   53178      Peptidyl-tRNA hydrolase
   53187      Zn-dependent exopeptidases
   53218      Molybdenum cofactor biosynthesis proteins
   53223      Aminoacid dehydrogenase-like, N-terminal domain
   53244      MurD-like peptide ligases, peptide-binding domain
   53254      Phosphoglycerate mutase-like
   53271      PRTase-like
   53323      Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
   53328      Formyltransferase
   53335      S-adenosyl-L-methionine-dependent methyltransferases
   53383      PLP-dependent transferases
   53448      Nucleotide-diphospho-sugar transferases
   53474      alpha/beta-Hydrolases
   53590      Nucleoside hydrolase
   53613      Ribokinase-like
   53623      MurD-like peptide ligases, catalytic domain
   53639      AraD-like aldolase/epimerase
   53659      Isocitrate/Isopropylmalate dehydrogenases
   53671      Aspartate/ornithine carbamoyltransferase
   53681      Aspartate/glutamate racemase
   53686      Tryptophan synthase beta subunit-like PLP-dependent enzymes
   53697      SIS domain
   53706      Formate dehydrogenase/DMSO reductase, domains 1-3
   53732      Aconitase iron-sulfur domain
   53738      Phosphoglucomutase, first 3 domains
   53748      Phosphoglycerate kinase
   53756      UDP-Glycosyltransferase/glycogen phosphorylase
   53784      Phosphofructokinase
   53790      Cobalt precorrin-4 methyltransferase CbiF
   53800      Chelatase
   53807      "Helical backbone" metal receptor
   53850      Periplasmic binding protein-like II
   53901      Thiolase-like
   53955      Lysozyme-like
   54106      LysM domain
   54197      HIT-like
   54211      Ribosomal protein S5 domain 2-like
   54292      2Fe-2S ferredoxin-like
   54364      Translation initiation factor IF3, N-terminal domain
   54368      Glutamine synthetase, N-terminal domain
   54373      FAD-linked reductases, C-terminal domain
   54506      Diaminopimelate epimerase
   54565      Ribosomal protein S16
   54570      Ribosomal protein S19
   54631      CBS-domain
   54675      Quinolinic acid phosphoribosyltransferase, N-terminal domain
   54713      Elongation factor Ts (EF-Ts), dimerisation domain
   54719      Fe,Mn superoxide dismutase (SOD), C-terminal domain
   54736      ClpS-like
   54747      Ribosomal protein L11, N-terminal domain
   54752      RecA protein, C-terminal domain
   54768      dsRNA-binding domain-like
   54782      Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
   54810      GMP synthetase C-terminal dimerisation domain
   54814      Prokaryotic type KH domain (pKH-domain)
   54821      Ribosomal protein S3 C-terminal domain
   54826      Enolase N-terminal domain-like
   54843      Ribosomal protein L22
   54862      4Fe-4S ferredoxins
   54913      GlnB-like
   54919      Nucleoside diphosphate kinases
   54975      Acylphosphatase-like
   54980      EF-G/eEF-2 domains III and V
   54991      Anticodon-binding domain of PheRS
   54999      Ribosomal protein S10
   55008      Metal-binding domain
   55021      Regulatory domain in the aminoacid metabolism
   55040      Molybdenum cofactor biosynthesis protein C, MoaC
   55048      Probable ACP-binding domain of malonyl-CoA ACP transacylase
   55060      GHMP Kinase
   55083      6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
   55103      FAD-linked oxidases, C-terminal domain
   55120      Pseudouridine synthase
   55124      Sulfite reductase, domains 1 and 3
   55174      Alpha-L RNA-binding motif
   55186      Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
   55190      Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
   55194      Ribosome recycling factor, RRF
   55200      Translation initiation factor IF3, C-terminal domain
   55205      EPT/RTPC-like
   55234      Cyanase C-terminal domain
   55248      Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
   55257      RBP11-like subunits of RNA polymerase
   55271      DNA repair protein MutS, domain I
   55282      Ribosomal protein L5
   55298      YjgF-like
   55326      Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
   55347      Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
   55424      FAD/NAD-linked reductases, dimerisation (C-terminal) domain
   55620      Tetrahydrobiopterin biosynthesis enzymes-like
   55653      Ribosomal protein L9 C-domain
   55658      L9 N-domain-like
   55666      Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
   55681      Class II aaRS and biotin synthetases
   55718      Sterol carrier protein, SCP
   55729      Acyl-CoA N-acyltransferases (Nat)
   55781      GAF domain-like
   55785      PYP-like sensor domain (PAS domain)
   55811      Nudix
   55821      YrdC/RibB
   55826      Hypothetical protein HI1434 (YbaK homologue)
   55874      ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
   55920      Creatinase/aminopeptidase
   55931      Glutamine synthase/guanido kinase
   55973      S-adenosylmethionine synthetase
   55979      DNA clamp
   56014      Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
   56037      B3/B4 domain of PheRS, PheT
   56042      Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
   56047      Ribosomal protein S8
   56053      Ribosomal protein L6
   56059      Glutathione synthetase ATP-binding domain-like
   56091      DNA ligase/mRNA capping enzyme, catalytic domain
   56176      FAD-binding domain
   56194      Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
   56214      4'-phosphopantetheinyl transferase
   56235      N-terminal nucleophile aminohydrolases (Ntn hydrolases)
   56281      Metallo-hydrolase/oxidoreductase
   56317      Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase
   56322      ADC synthase
   56327      Lactate & malate dehydrogenases, C-terminal domain
   56420      Peptide deformylase
   56425      Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
   56519      Penicillin binding protein dimerisation domain
   56553      Insert subdomain of RNA polymerase alpha subunit
   56601      beta-Lactamase/D-ala carboxypeptidase
   56655      Sugar phosphatases
   56712      Prokaryotic type I DNA topoisomerase
   56719      Type II DNA topoisomerase
   56731      DNA primase DnaG catalytic core
   56752      D-aminoacid aminotransferase-like PLP-dependent enzymes
   56762      Nickel-iron hydrogenase, large subunit
   56770      Nickel-iron hydrogenase, small subunit
   56778      Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment
   56784      HAD-like
   56796      Dehydroquinate synthase-like
   56808      Ribosomal protein L1
   57716      Glucocorticoid receptor-like (DNA-binding domain)
   57774      Microbial and mitochondrial ADK, insert "zinc finger" domain
   57938      Cysteine-rich domain of the chaperone protein DnaJ.
   63380      Riboflavin synthase domain-like
   63411      LuxS/MPP-like metallohydrolase
   63418      MurE/MurF N-terminal domain
   63848      Cell-division inhibitor MinC, C-terminal domain
   63867      Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain
   63882      Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains
   63892      Pyridoxine 5'-phosphate synthase
   64005      Undecaprenyl diphosphate synthase
   64153      YjeF N-terminal domain-like
   64167      SurE-like
   64182      DHH phosphoesterases
   64197      AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
   64263      Prokaryotic ribosomal protein L17
   64307      SirA-like
   64325      Dimeric C-terminal domain of membrane protein TonB
   69055      1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
   69065      RNase III endonuclease catalytic domain
   69336      Alpha subunit of glutamate synthase, C-terminal domain
   69500      D-Tyr tRNAtyr deacylase
   69572      Molybdenum cofactor biosynthesis protein MoeB
   69742      Glutamyl tRNA-reductase catalytic, N-terminal domain
   69754      Ribosome binding protein Y (YfiA homologue)
   69765      2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
   69796      Thymidylate synthase-complementing protein Thy1
   69864      Argininosuccinate synthetase, C-terminal domain
   74731      Ribosomal protein L20
   74942      YhbC-like, C-terminal domain
   74982      Small protein B (SmpB)
   75304      Amidase signature (AS) enzymes
   75420      YhbC-like, N-terminal domain
   75620      Polypeptide chain release factor 2 (RF2)
   75625      YebC-like
   81271      TGS-like
   81296      E set domains
   81301      Nucleotidyltransferase
   81653      Calcium ATPase, transduction domain A
   81767      Pre-protein croslinking domain of SecA
   81799      Putative methyltransferase TM0872, insert domain
   81827      Porin chaperone SurA, peptide-binding domain
   81891      tRNA CCA-adding enzyme, C-terminal domains
   81923      Double Clp-N motif
   82051      Obg GTP-binding protein N-terminal domain
   82679      N-utilization substance G protein NusG, N-terminal domain
   82689      Mechanosensitive channel protein MscS (YggB), C-terminal domain
   82693      Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
   82714      Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains