| Genome Name | No of Superfamily |
| Acinetobacter sp. ADP1 | 514 |
| Aeropyrum pernix | 353 |
| Agrobacterium tumefaciens | 513 |
| Anopheles gambiae | 687 |
| Arabidopsis thaliana | 702 |
| Archaeoglobus fulgidus | 434 |
| Avena sativa | 81 |
| Bacillus anthracis | 561 |
| Bacillus cereus | 550 |
| Bacillus halodurans | 549 |
| Bacillus subtilis | 547 |
| Bacillus thuringiensis | 548 |
| Bacteroides thetaiotaomicron | 504 |
| Bartonella henselae | 418 |
| Bartonella quintana | 401 |
| Bdellovibrio bacteriovorus | 487 |
| Bifidobacterium longum | 426 |
| Bordetella bronchiseptica | 523 |
| Bordetella parapertussi | 514 |
| Bordetella pertussis | 500 |
| Borrelia burgdorferi | 328 |
| Bradyrhizobium japonicum | 536 |
| Brucella melitensis | 482 |
| Buchnera aphidicola | 356 |
| Buchnera sp. | 368 |
| Caenorhabditis elegans | 638 |
| Campylobacter jejuni | 469 |
| Candidatus blochmannia floridanus | 351 |
| Caulobacter vibrioides | 509 |
| Chlamydia muridarum | 352 |
| Chlamydia trachomatis | 342 |
| Chlamydophila caviae | 368 |
| Chlamydophila pneumoniae | 359 |
| Chlorobium tepidum | 464 |
| Chromobacterium violaceum | 541 |
| Clostridium acetobutylicum | 547 |
| Clostridium perfringens | 525 |
| Clostridium tetani | 473 |
| Corynebacterium diphtheriae | 453 |
| Corynebacterium efficiens | 478 |
| Corynebacterium glutamicum | 471 |
| Coxiella burnetii | 443 |
| Danio rerio | 586 |
| Deinococcus radiodurans | 477 |
| Desulfovibrio vulgaris | 488 |
| Drosophila melanogaster | 710 |
| Encephalitozoon cuniculi | 333 |
| Enterococcus faecalis | 473 |
| Escherichia coli | 599 |
| Fusobacterium nucleatum | 474 |
| Geobacter sulfurreducens | 515 |
| Gloeobacter violaceus | 498 |
| Glycine max | 274 |
| Haemophilus ducreyi | 457 |
| Haemophilus influenzae | 492 |
| Halobacterium sp. | 414 |
| Helicobacter hepaticus | 432 |
| Helicobacter pylori | 419 |
| Homo sapiens | 750 |
| Hordeum vulgare | 235 |
| Lactobacillus johnsonii | 423 |
| Lactobacillus plantarum | 445 |
| Lactococcus lactis | 460 |
| Leifsonia xyli | 413 |
| Leptospira interrogans | 485 |
| Listeria innocua | 510 |
| Listeria monocytogenes | 514 |
| Lycopersicon esculentum | 270 |
| Mesorhizobium loti | 563 |
| Methanocaldococcus jannaschii | 415 |
| Methanococcus maripaludis | 421 |
| Methanopyrus kandleri | 375 |
| Methanosarcina acetivorans | 468 |
| Methanosarcina mazei | 478 |
| Methanothermobacter thermautotrophicus | 425 |
| Mus musculus | 796 |
| Mycobacterium avium | 463 |
| Mycobacterium bovis | 476 |
| Mycobacterium leprae | 422 |
| Mycobacterium tuberculosis | 470 |
| Mycoplasma gallisepticum | 305 |
| Mycoplasma genitalium | 296 |
| Mycoplasma mobile | 306 |
| Mycoplasma mycoides | 321 |
| Mycoplasma pneumoniae | 271 |
| Mycoplasma pulmonis | 328 |
| Nanoarchaeum equitans | 257 |
| Neisseria meningitidis | 468 |
| Neurospora crassa | 614 |
| Nitrosomonas europaea | 476 |
| Nostoc sp. | 546 |
| Oceanobacillus iheyensis | 528 |
| Onion yellows phytoplasm | 277 |
| Oryza sativa | 579 |
| Parachlamydia sp. UWE25 | 416 |
| Pasteurella multocida | 501 |
| Pectobacterium carotovorum | 588 |
| Photorhabdus luminescens | 555 |
| Picrophilus torridus | 393 |
| Pirellula sp. | 509 |
| Plasmodium falciparum | 130 |
| Porphyromonas gingivalis | 418 |
| Prochlorococcus marinus | 537 |
| Propionibacterium acnes | 456 |
| Pseudomonas aeruginosa | 576 |
| Pseudomonas putida | 560 |
| Pseudomonas syringae | 545 |
| Pyrobaculum aerophilum | 388 |
| Pyrococcus abyssi | 416 |
| Pyrococcus furiosus | 412 |
| Pyrococcus horikoshii | 400 |
| Ralstonia solanacearum | 542 |
| Rattus norvegicus | 715 |
| Rickettsia conorii | 375 |
| Rickettsia prowazekii | 362 |
| Saccharomyces cerevisiae | 553 |
| Salmonella enterica | 567 |
| Salmonella typhimurium | 577 |
| Salmonella typhi | 1150 |
| Schizosaccharomyces pombe | 556 |
| Shewanella oneidensis | 554 |
| Shigella flexneri | 590 |
| Sinorhizobium meliloti | 525 |
| Staphylococcus aureus | 509 |
| Staphylococcus epidermidis | 491 |
| Streptococcus agalactiae | 455 |
| Streptococcus mutans | 445 |
| Streptococcus pneumoniae | 452 |
| Streptococcus pyogenes | 444 |
| Streptomyces avermitilis | 544 |
| Streptomyces coelicolor | 524 |
| Sulfolobus solfataricus | 395 |
| Sulfolobus tokodaii | 415 |
| Synechocystis sp. PCC 6803 | 503 |
| Thermoanaerobacter tengcongensis | 510 |
| Thermoplasma acidophilum | 400 |
| Thermoplasma volcanium | 392 |
| Thermosynechococcus elongatus | 459 |
| Thermotoga maritima | 478 |
| Thermus thermophilus | 466 |
| Treponema denticola | 421 |
| Treponema pallidum | 329 |
| Triticum aestivum | 263 |
| Tropheryma whipplei | 345 |
| Ureaplasma urealyticum | 293 |
| Vibrio cholerae | 553 |
| Vibrio parahaemolyticus | 570 |
| Vibrio vulnificus | 571 |
| Wigglesworthia glossinidia | 357 |
| Wolbachia endosymbiont of Drosophila melanogaster | 392 |
| Wolinella succinogenes | 450 |
| Xanthomonas campestris | 549 |
| Xanthomonas citri | 543 |
| Xylella fastidiosa | 473 |
| Yersinia pestis | 581 |
| Zea mays | 277 |
