| Genome Name | No of Superfamily |
| H1N1 swine influenza virus | 2 |
| Habenaria repens | 2 |
| Habralictus sp. BND-2001 | 2 |
| Habranthus martinezii | 2 |
| Habronattus sp. NMEX | 1 |
| Habrotrocha constricta | 2 |
| Hadronyche infensa | 1 |
| Hadronyche versuta | 1 |
| Hadrurus arizonensis | 3 |
| Haemadipsa zeylanica | 2 |
| Haemanthus humilis | 2 |
| Haemanthus magnificeas | 1 |
| Haemaphysalis longicornis | 6 |
| Haematobia irritans | 10 |
| Haematococcus lacustris | 1 |
| Haematococcus pluvialis | 2 |
| Haematoloechus sp. | 1 |
| Haematomyzus elephantis | 1 |
| Haematopota pluvialis | 1 |
| Haematopus ater | 1 |
| Haementeria officinalis | 1 |
| Haemonchus contortus | 29 |
| Haemophilus aegyptius | 1 |
| Haemophilus ducreyi | 461 |
| Haemophilus influenzae | 526 |
| Haemophilus paragallinarum | 5 |
| Haemophilus parahaemolyticus | 1 |
| Haemophilus parainfluenzae | 3 |
| Haemophilus phage HP1 | 2 |
| Haemophilus phage HP2 | 2 |
| Haemophilus sp. | 2 |
| Haemophilus sp. 26E | 3 |
| Haemopis marmorata | 2 |
| Hafnia alvei | 9 |
| Hakea myrtoides | 2 |
| Halaelurus bivius | 1 |
| Halanaerobium praevalens | 2 |
| Halcyon malimbica | 1 |
| Halesia carolina | 6 |
| Halesia diptera | 3 |
| Halesia macgregori | 2 |
| Haliaeetus albicilla | 1 |
| Haliastur indus | 1 |
| Halichoeres trimaculatus | 1 |
| Halichoerus grypus | 4 |
| Halichondria okadai | 2 |
| Halichrysis micans | 2 |
| Halimeda discoidea | 2 |
| Halimeda opuntia | 2 |
| Halimodendron halodendron | 2 |
| Halimolobos perplexa | 5 |
| Haliotis asinina | 2 |
| Haliotis assimilis | 2 |
| Haliotis australis | 1 |
| Haliotis conicopora | 1 |
| Haliotis corrugata | 1 |
| Haliotis cracherodii | 1 |
| Haliotis cyclobates | 1 |
| Haliotis discus | 3 |
| Haliotis diversicolor | 1 |
| Haliotis fulgens | 1 |
| Haliotis gigantea | 1 |
| Haliotis iris | 1 |
| Haliotis kamtschatkana | 1 |
| Haliotis laevigata | 2 |
| Haliotis madaka | 2 |
| Haliotis midae | 1 |
| Haliotis ovina | 1 |
| Haliotis pustulata | 1 |
| Haliotis roei | 1 |
| Haliotis rubra | 1 |
| Haliotis rufescens | 6 |
| Haliotis scalaris | 1 |
| Haliotis sieboldii | 1 |
| Haliotis sorenseni | 1 |
| Haliotis tuberculata | 5 |
| Haliotis varia | 1 |
| Haliotis walallensis | 1 |
| Halleria lucida | 4 |
| Haloarcula hispanica | 3 |
| Haloarcula japonica | 2 |
| Haloarcula marismortui | 55 |
| Haloarcula vallismortis | 1 |
| Halobacillus halophilus | 1 |
| Halobacterium salinarum | 39 |
| Halobacterium sp. GRB | 2 |
| Halobacterium sp. NRC-1 | 351 |
| Halobacterium sp. NRC-817 | 1 |
| Halocarpus bidwillii | 2 |
| Halocarpus biformis | 2 |
| Halocarpus kirkii | 2 |
| Halochromatium salexigens | 2 |
| Halococcus morrhuae | 3 |
| Halocynthia roretzi | 55 |
| Halodule beaudettei | 2 |
| Halodule pinifolia | 2 |
| Halodule wrightii root rhizosphere bacterium | 1 |
| Haloferax lucentense | 3 |
| Haloferax mediterranei | 14 |
| Haloferax sp. | 1 |
| Haloferax volcanii | 48 |
| Halomonas aquamarina | 2 |
| Halomonas cupida | 2 |
| Halomonas elongata | 2 |
| Halomonas eurihalina | 7 |
| Halomonas halmophila | 2 |
| Halomonas halodenitrificans | 3 |
| Halomonas pacifica | 2 |
| Halomonas salina | 1 |
| Halomonas sp. SK1 | 1 |
| Halophila decipiens | 2 |
| Halophila engelmannii | 2 |
| Halophila ovalis | 2 |
| Halophytum ameghinoi | 1 |
| Halopithys incurva | 2 |
| Halopteris filicina | 2 |
| Haloragis aspera | 2 |
| Haloragis erecta | 3 |
| Haloragis serra | 2 |
| Halorhodospira halochloris | 3 |
| Halorhodospira halophila | 5 |
| Halorubrum saccharovorum | 2 |
| Halosaccion glandiforme | 2 |
| Halosiphon tomentosus | 2 |
| Halothiobacillus neapolitanus | 5 |
| Halothiobacillus sp. RA13 | 2 |
| Halovirus HF2 | 12 |
| Halteria grandinella | 3 |
| Halteromyces radiatus | 2 |
| Halymenia dilatata | 2 |
| Halymenia floresia | 2 |
| Halymenia maculata | 2 |
| Hamamelis mollis | 2 |
| Hamamelistes betulinus | 1 |
| Hamamelistes kagamii | 1 |
| Hamamelistes miyabei | 1 |
| Hamamelistes sp. 94-27 | 1 |
| Hamamelistes spinosus | 1 |
| Hamamelis virginiana | 4 |
| Hamelia cuprea | 2 |
| Hampea appendiculata | 1 |
| Hamster intracisternal a-particle | 1 |
| Hamster papovavirus | 2 |
| Hamster polyomavirus | 1 |
| Hanguana malayana | 5 |
| Hannonia hesperidum | 2 |
| Hanseniaspora uvarum | 2 |
| Hanseniella sp. 'jcrjws1' | 2 |
| Hantaan virus | 4 |
| Hantavirus A9 | 2 |
| Hantavirus AH09 | 2 |
| Hantavirus AH211 | 1 |
| Hantavirus Gou3 | 1 |
| Hantavirus Gou3-v9 | 1 |
| Hantavirus HTN | 1 |
| Hantavirus IR461 | 1 |
| Hantavirus L99 | 1 |
| Hantavirus Liu | 1 |
| Hantavirus Lodz-1 | 1 |
| Hantavirus Lodz-2 | 1 |
| Hantavirus LR1 | 2 |
| Hantavirus Monongahela-1 | 2 |
| Hantavirus R22 | 1 |
| Hantavirus S85-46 | 1 |
| Hantavirus SN7 | 1 |
| Hantavirus sp. | 1 |
| Hantavirus tchoupitoulas | 1 |
| Hantavirus Z10 | 1 |
| Hantavirus Z37 | 1 |
| Hapalemur griseus | 3 |
| Hapaline sp. HAR 056 | 2 |
| Haplobothrium globuliforme | 2 |
| Haplochromis nyererei | 1 |
| Haplocladium virginianum | 1 |
| Haplodontium megalocarpum | 1 |
| Haplodontium reticulatum | 1 |
| Haploglossa villosula | 1 |
| Haplohymenium longinerve | 2 |
| Haplohymenium pseudotriste | 2 |
| Haplohymenium triste | 1 |
| Haplomitrium hookeri | 5 |
| Haplomitrium mnioides | 6 |
| Haplophilus subterraneus | 1 |
| Haplospora globosa | 2 |
| Haplostachys haplostachya | 2 |
| Haraldiophyllum mirabile | 2 |
| Haraldiophyllum ramirezii | 2 |
| Hardenbergia violacea | 2 |
| Harmonia nutans | 1 |
| Harmonides sp. | 1 |
| Harmothoe imbricata | 2 |
| Harpactes diardii | 1 |
| Harpadon microchir | 1 |
| Harpagifer antarcticus | 2 |
| Harpagifer bispinis | 1 |
| Harpagophytum grandidieri | 2 |
| Harperia lateriflora | 2 |
| Harpobittacus australis | 3 |
| Harpochytrium sp. JEL94 | 4 |
| Harrimanella hypnoides | 2 |
| Harrisonia perforata | 2 |
| Harungana madagascariensis | 2 |
| Harveya capensis | 5 |
| Harveya purpurea | 3 |
| Harveya squamosa | 2 |
| Harvey murine sarcoma virus | 1 |
| Hauya elegans | 2 |
| Haworthia subfasciata | 2 |
| Hebe benthami | 3 |
| Hebe cheesemanii | 4 |
| Hebe cupressoides | 3 |
| Hebe elliptica | 2 |
| Hebe formosa | 2 |
| Hebeloma cylindrosporum | 8 |
| Hebe macrantha | 2 |
| Hebenstretia dentata | 2 |
| Hebe odora | 2 |
| Hebe salicifolia | 2 |
| Hebe salicornioides | 2 |
| Hebe subalpina | 3 |
| Hecatonema sp. K-0229 | 2 |
| Hechtia montana | 2 |
| Hecistopteris pumila | 2 |
| Heckeldora staudtii | 2 |
| Hedera helix | 4 |
| Hediste diversicolor | 1 |
| Hediste japonica | 2 |
| Hedwigia ciliata | 3 |
| Hedycarya angustifolia | 1 |
| Hedycarya arborea | 3 |
| Hedychium coronarium | 1 |
| Hedychium flavescens | 2 |
| Hedychium flavum | 5 |
| Hedychium gardnerianum | 2 |
| Hedyosmum arborescens | 5 |
| Hedyosmum sp. CCWD-2000 | 3 |
| Hedyotis corymbosa | 2 |
| Hedyotis fruticosa | 2 |
| Hedyotis littoralis | 2 |
| Hedyotis nigricans | 2 |
| Hedysarum vicioides | 2 |
| Hedyscepe canterburyana | 2 |
| Heimia myrtifolia | 2 |
| Heinsenia diervilleoides | 2 |
| Heinsia crinita | 2 |
| Heisteria parvifolia | 5 |
| Hekistocarpa minutiflora | 2 |
| Heladena multiflora | 2 |
| Helarctos malayanus | 1 |
| Helcomyza mirabilis | 2 |
| Heliamphora nutans | 2 |
| Heliamphora sp. Anderberg s.n. | 3 |
| Helianthemum grandiflorum | 4 |
| Helianthus annuus | 54 |
| Helianthus annuus x Helianthus debilis subsp. debilis | 1 |
| Helianthus tuberosus | 8 |
| Helicobacter bizzozeronii | 3 |
| Helicobacter cinaedi | 1 |
| Helicobacter felis | 7 |
| Helicobacter heilmannii | 4 |
| Helicobacter hepaticus | 432 |
| Helicobacter mustelae | 7 |
| Helicobacter pylori | 461 |
| Helicobacter salomonis | 2 |
| Helicobacter sp. TD1 | 2 |
| Helicodontium capillare | 3 |
| Helicolenus hilgendorfi | 1 |
| Heliconia indica | 5 |
| Heliconia irrasa | 5 |
| Heliconia latispatha | 2 |
| Heliconia paka | 5 |
| Heliconia rostrata | 5 |
| Heliconius antiochus | 1 |
| Heliconius atthis | 2 |
| Heliconius besckei | 1 |
| Heliconius burneyi | 1 |
| Heliconius charithonia | 1 |
| Heliconius clysonymus | 1 |
| Heliconius congener | 1 |
| Heliconius cydno | 1 |
| Heliconius demeter | 1 |
| Heliconius doris | 1 |
| Heliconius egeria | 1 |
| Heliconius eleuchia | 1 |
| Heliconius elevatus | 1 |
| Heliconius erato | 1 |
| Heliconius ethilla | 1 |
| Heliconius hecale | 1 |
| Heliconius heurippa | 1 |
| Heliconius hewitsoni | 1 |
| Heliconius hierax | 1 |
| Heliconius himera | 1 |
| Heliconius ismenius | 1 |
| Heliconius leucadia | 1 |
| Heliconius melpomene | 1 |
| Heliconius numata | 1 |
| Heliconius pardalinus | 1 |
| Heliconius ricini | 1 |
| Heliconius sapho | 1 |
| Heliconius sara | 1 |
| Heliconius telesiphe | 1 |
| Heliconius tristero | 1 |
| Heliconius wallacei | 1 |
| Heliconius xanthocles | 1 |
| Helicophyllum torquatum | 1 |
| Helicopsyche borealis | 2 |
| Helicosphaera carteri | 2 |
| Helicosporidium sp. ex Simulium jonesii | 2 |
| Helicosporium sp. HN1 | 1 |
| Helicostylum elegans | 1 |
| Helicoverpa armigera | 18 |
| Helicoverpa armigera nuclear polyhedrosis virus | 9 |
| Helicoverpa armigera nucleopolyhedrovirus G4 | 12 |
| Helicoverpa assulta | 1 |
| Helicoverpa gelotopoeon | 1 |
| Helicoverpa hawaiiensis | 1 |
| Helicoverpa pallida | 1 |
| Helicoverpa punctigera | 3 |
| Helicoverpa zea | 7 |
| Helicoverpa zea single nucleocapsid nucleopolyhedrovirus | 12 |
| Helicteres angustifolia | 2 |
| Helicteres baruensis | 4 |
| Heligmosomoides polygyrus | 1 |
| Helinus integrifolius | 2 |
| Heliobacillus mobilis | 6 |
| Heliobacterium chlorum | 1 |
| Heliobacterium gestii | 2 |
| Heliocarpus americanus | 5 |
| Heliocheilus albipunctella | 1 |
| Heliocidaris erythrogramma | 12 |
| Heliocidaris tuberculata | 2 |
| Heliodorus cochisensis | 1 |
| Heliolonche pictipennis | 3 |
| Heliomaster furcifer | 1 |
| Heliophobius argenteocinereus | 1 |
| Heliophrya erhardi | 2 |
| Heliothis armigera entomopoxvirus | 1 |
| Heliothis decorata | 1 |
| Heliothis galathae | 1 |
| Heliothis nubila | 1 |
| Heliothis oregonica | 1 |
| Heliothis phloxiphaga | 1 |
| Heliothis subflexa | 3 |
| Heliothis terracottoides | 2 |
| Heliothis virescens | 28 |
| Heliothis zea virus 1 | 16 |
| Heliothodes diminutivus | 2 |
| Heliotropium arborescens | 3 |
| Helisoma trivolvis | 3 |
| Helix aspersa | 2 |
| Helix pomatia | 6 |
| Hellmuthia membranacea | 2 |
| Helmholtzia acorifolia | 5 |
| Helminthosporium solani | 4 |
| Helminthosporium victoriae virus 190S | 1 |
| Helmiopsiella madagascariensis | 2 |
| Helobdella robusta | 10 |
| Helobdella sp. | 1 |
| Helobdella stagnalis | 1 |
| Helobdella triserialis | 5 |
| Heloderma horridum horridum | 2 |
| Heloderma suspectum | 1 |
| Helodon onychodactylus | 4 |
| Heloniopsis orientalis | 5 |
| Helwingia japonica | 6 |
| Hemachatus haemachatus | 3 |
| Hemaris thysbe | 1 |
| Hemerocallis fulva | 2 |
| Hemerocallis hybrid cultivar | 5 |
| Hemerocallis lilioasphodelus | 3 |
| Hemicentrotus pulcherrimus | 22 |
| Hemidactylus frenatus | 1 |
| Hemidiodia ocimifolia | 2 |
| Hemileuca electra | 2 |
| Hemileuca sp. L6 | 3 |
| Hemimeris sabulosa | 3 |
| Hemineura frondosa | 2 |
| Hemionitis elegans | 2 |
| Hemionitis levyi | 2 |
| Hemiphragma heterophyllum | 3 |
| Hemiphylacus latifolius | 2 |
| Hemiprocne longipennis | 1 |
| Hemiptelea davidii | 2 |
| Hemiscolopia trimera | 2 |
| Hemitomes congestum | 1 |
| Hemitragus jemlahicus | 1 |
| Hemitriakis japonica | 1 |
| Hemitripterus americanus | 2 |
| Hendra virus | 2 |
| Henicodium geniculatum | 1 |
| Hennecartia omphalandra | 2 |
| Henotesia angulifascia | 1 |
| Henotesia ankaratra | 1 |
| Henotesia ankova | 2 |
| Henotesia avelona | 1 |
| Henotesia bicristata | 1 |
| Henotesia exocellata | 1 |
| Henotesia fuliginosa | 1 |
| Henotesia laetifica | 2 |
| Henotesia maeva | 1 |
| Henotesia pauper | 1 |
| Henotesia peitho | 1 |
| Henotesia perspicua | 1 |
| Henotesia sp. Torres-10 | 1 |
| Henotesia sp. Torres-14A | 1 |
| Henotesia sp. Torres-22 | 1 |
| Henotesia sp. Torres-23 | 1 |
| Henotesia sp. Torres-32 | 1 |
| Henotesia sp. Torres-49 | 1 |
| Henotesia sp. Torres-75 | 1 |
| Henotesia sp. Torres-76 | 1 |
| Henotesia sp. Torres-77 | 1 |
| Henotesia strigula | 1 |
| Henotesia subsimilis | 1 |
| Henotesia turbans | 1 |
| Henotesia turbata | 1 |
| Henotesia uniformis | 1 |
| Hepatica transsilvanica | 1 |
| Hepatitis A virus | 2 |
| Hepatitis B virus | 21 |
| Hepatitis C virus | 16 |
| Hepatitis E-like viruses | 2 |
| Hepatitis E virus | 4 |
| Hepatitis GB virus A | 1 |
| Hepatitis GB virus B | 1 |
| Hepatitis G virus | 1 |
| Hepatoxylon sp. | 1 |
| Hepialus californicus | 1 |
| Heptacodium miconioides | 2 |
| Heptophylla picea | 1 |
| Heracleum dulce | 2 |
| Herbaspirillum seropedicae | 10 |
| Herbertia pulchella | 3 |
| Herbertus pensilis | 2 |
| Herdmania curvata | 3 |
| Herdmania momus | 2 |
| Heringia mirabilis | 2 |
| Heritiera angustata | 2 |
| Heritiera littoralis | 2 |
| Hermannia erodioides | 5 |
| Hernandia albiflora | 2 |
| Hernandia moerenhoutiana | 2 |
| Herpesvirus papio | 4 |
| Herpesvirus tupaia 1 | 2 |
| Herpetineuron toccoae | 2 |
| Herpetosiphon aurantiacus | 6 |
| Herpolirion novae-zelandiae | 2 |
| Herrania albiflora | 1 |
| Herrania cuatrecasana | 1 |
| Herrania kanukuensis | 1 |
| Herrania mariae | 1 |
| Herrania nitida | 1 |
| Herrania nycterodendron | 1 |
| Herrania purpurea | 1 |
| Herrania umbraticola | 1 |
| Herreria montevidensis | 5 |
| Herzogiella adscendens | 1 |
| Herzogiella cylindricarpa | 1 |
| Herzogiella seligeri | 1 |
| Herzogiella striatella | 1 |
| Hesperantha pseudopilosa | 3 |
| Hesperempis sp. NCSU-99071979 | 2 |
| Hesperonemastoma modestum | 3 |
| Hesperothamnus pentaphyllus | 2 |
| Hesperoxiphion peruvianum | 3 |
| Hessea zeyheri | 2 |
| Hesseltinella vesiculosa | 2 |
| Heteractis crispa | 3 |
| Heteractis magnifica | 3 |
| Heteranthelium piliferum | 3 |
| Heteranthera dubia | 3 |
| Heteranthera limosa | 3 |
| Heteranthera oblongifolia | 2 |
| Heteranthera rotundifolia | 2 |
| Heteranthera seubertiana | 2 |
| Heterobasidion annosum | 1 |
| Heterobathmia pseuderiocrania | 1 |
| Heterocapsa circularisquama virus | 1 |
| Heterocapsa pygmaea | 1 |
| Heterocentron subtriplinervium | 1 |
| Heterocephalus glaber | 2 |
| Heterocheila buccata | 2 |
| Heterococcus caespitosus | 2 |
| Heterodera glycines | 25 |
| Heterodera schachtii | 2 |
| Heterodontus francisci | 7 |
| Heterodontus portusjacksoni | 1 |
| Heterodoxia denticulata | 2 |
| Heteromeles arbutifolia | 1 |
| Heterometrus spinifer | 2 |
| Heteromorpha trifoliata | 2 |
| Heteromysis formosa | 2 |
| Heterophrynus sp. 'Het' | 3 |
| Heterophyllium affine | 2 |
| Heterophyllium nematosum | 2 |
| Heteropneustes fossilis | 2 |
| Heteropolygonatum pendulum | 2 |
| Heteropsilopus ingenuus | 1 |
| Heteropsis drepana | 1 |
| Heteropterys thyrsoidea | 3 |
| Heteropteryx dilatata | 1 |
| Heteropyxis natalensis | 4 |
| Heterosigma akashiwo | 3 |
| Heterosiphonia gibbesii | 2 |
| Heterosiphonia plumosa | 2 |
| Heterotermes aculabialis | 1 |
| Heterotermes sp. Darwin 1 | 1 |
| Heterotermes tenuior | 1 |
| Heterotropus sp. | 2 |
| Heterozostera tasmanica | 2 |
| Heuchera micrantha | 2 |
| Heuchera sanguinea | 3 |
| Hevea brasiliensis | 41 |
| Hewittia scandens | 2 |
| Hewittia sublobata | 5 |
| Hexalectris revoluta | 2 |
| Hexamita inflata | 6 |
| Hexamita sp. | 5 |
| Heywoodia lucens | 2 |
| Hibberdia magna | 2 |
| Hibbertia volubilis | 5 |
| Hibiscus chlorotic ringspot virus | 1 |
| Hibiscus punaluuensis | 5 |
| Hibiscus rosa-sinensis | 2 |
| Hibiscus syriacus | 2 |
| Hieracium piloselloides | 4 |
| Hieronymiella marginata | 2 |
| Hilara lugubris | 2 |
| Hilara sp. NCSU-99060349 | 2 |
| Hildebrandtia africana | 5 |
| Hildebrandtia promontorii | 5 |
| Hildebrandtia sp. Phillipson and Milijaona 3624 | 5 |
| Hildebrandtia valo | 5 |
| Hildebrandtiella pachyclada | 1 |
| Hildegardia barteri | 4 |
| Hildenbrandia angolensis | 2 |
| Hildenbrandia crouanii | 1 |
| Hildenbrandia occidentalis | 1 |
| Hildenbrandia prototypus | 2 |
| Hildenbrandia rivularis | 1 |
| Hildenbrandia rubra | 2 |
| Hillebrandia sandwicensis | 2 |
| Hillia valerii | 2 |
| Hiltonius sp. 'Hil' | 2 |
| Himantothallus grandifolius | 2 |
| Himetobi P virus | 1 |
| Hincksia hincksiae | 2 |
| Hintonia latiflora | 2 |
| Hiodon alosoides | 1 |
| Hippeastrum papilio | 5 |
| Hippeastrum sp. | 1 |
| Hippeastrum sp. Hahn 6875 | 3 |
| Hippocratea barbata | 3 |
| Hippocratea richardiana | 2 |
| Hippocrepis emerus | 2 |
| Hippoglossus hippoglossus | 5 |
| Hippophae salicifolia | 2 |
| Hippopotamus amphibius | 10 |
| Hipposideros commersoni | 1 |
| Hippotis sp. Clark and Watts 825 | 2 |
| Hippotragus equinus | 1 |
| Hippotragus niger | 1 |
| Hippuris vulgaris | 3 |
| Hippuris x lanceolata | 2 |
| Hiptage benghalensis | 2 |
| Hiptage sp. KMC-2001 | 2 |
| Hiraea bahiensis | 2 |
| Hiraea smilacina | 2 |
| Hirschfeldia incana | 1 |
| Hirtella bicornis | 2 |
| Hirtodrosophila pictiventris | 5 |
| Hirudinaria manillensis | 1 |
| Hirudo medicinalis | 22 |
| Hirudo nipponia | 1 |
| Hirundo pyrrhonota | 2 |
| Histiopteris incisa | 2 |
| Histophilus somni | 8 |
| Histriculus cavicola | 2 |
| Hodotermopsis japonica | 2 |
| Hodotermopsis sp. No1 | 1 |
| Hodotermopsis sp. No2 | 1 |
| Hodotermopsis yui | 1 |
| Hohorstiella lata | 1 |
| Hohorstiella passerinae | 1 |
| Holarrhena pubescens | 2 |
| Holboellia grandiflora | 2 |
| Holboellia latifolia | 5 |
| Holboellia parviflora | 2 |
| Holcus lanatus | 2 |
| Holmesia capensis | 1 |
| Holmskioldia sanguinea | 2 |
| Holocalyx balansae | 2 |
| Holocerina smilax | 3 |
| Holodiscus discolor | 2 |
| Holodiscus microphyllus | 1 |
| Hololena curta | 2 |
| Holomitrium borbonicum | 1 |
| Holomitrium calycinum | 1 |
| Holomitrium cylindraceum | 1 |
| Holomitrium vaginatum | 3 |
| Holoptelea integrifolia | 2 |
| Holorusia rubiginosa | 4 |
| Holospora obtusa | 4 |
| Holosticha sp. | 1 |
| Holothuria glaberrima | 1 |
| Holothuria tubulosa | 1 |
| Holotrichia diomphalia | 4 |
| Holotrichia parallela | 1 |
| Homalanthus populneus | 2 |
| Homalium racemosa | 2 |
| Homalosorus pycnocarpos | 2 |
| Homalotheciella subcapillata | 1 |
| Homarus americanus | 31 |
| Homarus gammarus | 7 |
| Homeria cookii | 2 |
| Homophoberia sp. | 3 |
| Homoplectra doringa | 2 |
| Homo sapiens | 928 |
| Hookeria acutifolia | 1 |
| Hookeria lucens | 1 |
| Hopkinsia adscendens | 2 |
| Hoplandria lateralis | 1 |
| Hoplandriini sp. MPD1 | 1 |
| Hoplobatrachus crassus | 1 |
| Hoplodactylus maculatus | 2 |
| Hoplopeza sp. NCSU-95051124 | 2 |
| Hoplopleura sciuricola | 1 |
| Hoplosathe frauenfeldi | 2 |
| Hoplosternum littorale | 1 |
| Hoplostethus japonicus | 1 |
| Hordeum bogdanii | 1 |
| Hordeum brachyantherum | 5 |
| Hordeum bulbosum | 2 |
| Hordeum chilense | 3 |
| Hordeum jubatum | 2 |
| Hordeum lechleri | 3 |
| Hordeum marinum | 3 |
| Hordeum murinum | 4 |
| Hordeum secalinum | 1 |
| Hordeum vulgare | 273 |
| Hormaphis betulae | 1 |
| Hormaphis hamamelidis | 1 |
| Horminum pyrenaicum | 2 |
| Hortaea werneckii | 3 |
| Hortonia floribunda | 2 |
| Hosta rectifolia | 2 |
| Hotaria parvula | 1 |
| Hotaria unmunsana | 1 |
| Hottentotta judaica | 1 |
| Hottonia palustris | 2 |
| Houlbertia passandava | 1 |
| Houlbertia wardii | 1 |
| Houlletia sanderi | 2 |
| Houstonia caerulea | 2 |
| Houttuynia cordata | 5 |
| Hovea elliptica | 2 |
| Hovenia dulcis | 2 |
| Howea belmoreana | 5 |
| Hoya bella | 2 |
| Hua gabonii | 1 |
| Hugonia platysepala | 2 |
| Human adenovirus A | 5 |
| Human adenovirus B | 8 |
| Human adenovirus C | 7 |
| Human adenovirus D | 6 |
| Human adenovirus E | 5 |
| Human adenovirus F | 6 |
| Human Adenovirus isolate SGH2289 | 1 |
| Human Adenovirus isolate SGH5253 | 1 |
| Human astrovirus | 2 |
| Human astrovirus type 3 | 2 |
| Human astrovirus type 6 | 2 |
| Human astrovirus type 7 | 1 |
| Human coronavirus OC43 | 1 |
| Human coxsackievirus A23 | 1 |
| Human coxsackievirus A4 | 1 |
| Human coxsackievirus A6 | 1 |
| Human echovirus 1 | 2 |
| Human echovirus 11 | 3 |
| Human echovirus 12 | 2 |
| Human echovirus 13 | 9 |
| Human echovirus 14 | 1 |
| Human echovirus 15 | 1 |
| Human echovirus 17 | 1 |
| Human echovirus 18 | 3 |
| Human echovirus 19 | 1 |
| Human echovirus 2 | 1 |
| Human echovirus 20 | 1 |
| Human echovirus 21 | 1 |
| Human echovirus 24 | 1 |
| Human echovirus 25 | 2 |
| Human echovirus 26 | 2 |
| Human echovirus 27 | 1 |
| Human echovirus 29 | 1 |
| Human echovirus 3 | 1 |
| Human echovirus 30 | 8 |
| Human echovirus 31 | 1 |
| Human echovirus 32 | 1 |
| Human echovirus 33 | 3 |
| Human echovirus 4 | 2 |
| Human echovirus 5 | 1 |
| Human echovirus 6 | 2 |
| Human echovirus 7 | 4 |
| Human echovirus 8 | 2 |
| Human echovirus 9 | 2 |
| Human endogenous retrovirus | 3 |
| Human endogenous retrovirus K | 4 |
| Human enterovirus 68 | 2 |
| Human enterovirus 70 | 2 |
| Human enterovirus 71 | 9 |
| Human enterovirus 73 | 2 |
| Human enterovirus A | 2 |
| Human enterovirus B | 3 |
| Human enterovirus C | 3 |
| Human enterovirus D | 2 |
| Human enterovirus E | 3 |
| Human hepatitis A virus | 2 |
| Human herpesvirus 1 | 12 |
| Human herpesvirus 2 | 12 |
| Human herpesvirus 3 | 14 |
| Human herpesvirus 4 | 15 |
| Human herpesvirus 5 | 10 |
| Human herpesvirus 6 | 4 |
| Human herpesvirus 7 | 7 |
| Human herpesvirus 8 | 18 |
| Human immunodeficiency virus | 10 |
| Human immunodeficiency virus 1 | 284 |
| Human immunodeficiency virus 2 | 16 |
| Human immunodeficiency virus type 1 | 1 |
| Human immunodeficiency virus type 1 lw12.3 isolate | 7 |
| Human metapneumovirus | 1 |
| Human papillomavirus | 4 |
| Human papillomavirus candHPV85 | 3 |
| Human papillomavirus RTRX7 | 3 |
| Human papillomavirus type 10 | 3 |
| Human papillomavirus type 11 | 4 |
| Human papillomavirus type 12 | 3 |
| Human papillomavirus type 13 | 3 |
| Human papillomavirus type 15 | 3 |
| Human papillomavirus type 16 | 7 |
| Human papillomavirus type 17 | 3 |
| Human papillomavirus type 18 | 4 |
| Human papillomavirus type 19 | 3 |
| Human papillomavirus type 20 | 6 |
| Human papillomavirus type 21 | 3 |
| Human papillomavirus type 22 | 3 |
| Human papillomavirus type 23 | 3 |
| Human papillomavirus type 24 | 3 |
| Human papillomavirus type 25 | 3 |
| Human papillomavirus type 26 | 3 |
| Human papillomavirus type 27 | 3 |
| Human papillomavirus type 28 | 3 |
| Human papillomavirus type 29 | 4 |
| Human papillomavirus type 3 | 3 |
| Human papillomavirus type 30 | 3 |
| Human papillomavirus type 31 | 3 |
| Human papillomavirus type 32 | 3 |
| Human papillomavirus type 33 | 3 |
| Human papillomavirus type 34 | 3 |
| Human papillomavirus type 35 | 3 |
| Human papillomavirus type 36 | 6 |
| Human papillomavirus type 37 | 3 |
| Human papillomavirus type 38 | 4 |
| Human papillomavirus type 39 | 3 |
| Human papillomavirus type 4 | 3 |
| Human papillomavirus type 40 | 3 |
| Human papillomavirus type 41 | 3 |
| Human papillomavirus type 42 | 3 |
| Human papillomavirus type 44 | 3 |
| Human papillomavirus type 45 | 3 |
| Human papillomavirus type 47 | 3 |
| Human papillomavirus type 48 | 3 |
| Human papillomavirus type 49 | 3 |
| Human papillomavirus type 5 | 3 |
| Human papillomavirus type 50 | 3 |
| Human papillomavirus type 51 | 3 |
| Human papillomavirus type 52 | 3 |
| Human papillomavirus type 53 | 3 |
| Human papillomavirus type 54 | 3 |
| Human papillomavirus type 55 | 3 |
| Human papillomavirus type 56 | 4 |
| Human papillomavirus type 57 | 3 |
| Human papillomavirus type 58 | 3 |
| Human papillomavirus type 59 | 3 |
| Human papillomavirus type 6 | 3 |
| Human papillomavirus type 60 | 3 |
| Human papillomavirus type 61 | 4 |
| Human papillomavirus type 63 | 3 |
| Human papillomavirus type 65 | 3 |
| Human papillomavirus type 66 | 4 |
| Human papillomavirus type 67 | 3 |
| Human papillomavirus type 68 | 2 |
| Human papillomavirus type 69 | 3 |
| Human papillomavirus type 7 | 3 |
| Human papillomavirus type 70 | 3 |
| Human papillomavirus type 71 | 3 |
| Human papillomavirus type 72 | 3 |
| Human papillomavirus type 73 | 3 |
| Human papillomavirus type 75 | 3 |
| Human papillomavirus type 76 | 3 |
| Human papillomavirus type 77 | 3 |
| Human papillomavirus type 8 | 3 |
| Human papillomavirus type 80 | 3 |
| Human papillomavirus type 82 | 4 |
| Human papillomavirus type 83 | 3 |
| Human papillomavirus type 84 | 3 |
| Human papillomavirus type 86 | 3 |
| Human papillomavirus type 87 | 3 |
| Human papillomavirus type 89 | 3 |
| Human papillomavirus type 9 | 3 |
| Human papillomavirus type 90 | 3 |
| Human papillomavirus type 91 | 3 |
| Human parainfluenza virus 1 | 2 |
| Human parainfluenza virus 2 | 2 |
| Human parainfluenza virus 3 | 2 |
| Human parainfluenza virus 4a | 2 |
| Human parainfluenza virus 4b | 2 |
| Human poliovirus 1 | 3 |
| Human poliovirus 1 Mahoney | 2 |
| Human poliovirus 2 | 4 |
| Human poliovirus 3 | 2 |
| Human rhinovirus 14 | 2 |
| Human rhinovirus 16 | 4 |
| Human rhinovirus 1A | 1 |
| Human rhinovirus 1B | 2 |
| Human rhinovirus 2 | 2 |
| Human rhinovirus 3 | 1 |
| Human rhinovirus 89 | 3 |
| Human rhinovirus B | 2 |
| Human rhinovirus sp. | 2 |
| Human rotavirus A | 6 |
| Human rotavirus C | 2 |
| Human T-cell lymphotropic virus type 4 | 1 |
| Human T-lymphotropic virus 1 | 11 |
| Human T-lymphotropic virus 2 | 5 |
| Human torovirus | 2 |
| Humbertia madagascariensis | 5 |
| Humicola grisea | 8 |
| Humicola insolens | 8 |
| Humiria balsamifera | 3 |
| Hummia onusta | 2 |
| Humulus japonicus | 2 |
| Humulus lupulus | 9 |
| Hunnemannia fumariifolia | 6 |
| Hunterella nodulosa | 1 |
| Huntleya heteroclita | 2 |
| Huodendron biaristatum | 2 |
| Huperzia billardieri | 2 |
| Huperzia campiana | 2 |
| Huperzia cumingii | 2 |
| Huperzia hippuridea | 2 |
| Huperzia hippuris | 2 |
| Huperzia linifolia | 2 |
| Huperzia lucidula | 3 |
| Huperzia phlegmarioides | 2 |
| Huperzia selago | 2 |
| Huperzia verticillata | 2 |
| Huperzia wilsonii | 2 |
| Hutchinsoniella macracantha | 4 |
| Hyacinthoides hispanica | 1 |
| Hyacinthus orientalis | 6 |
| Hyaenanche globosa | 2 |
| Hyalophora cecropia | 5 |
| Hyalophora euryalus | 3 |
| Hyalophora gloveri | 1 |
| Hyalotheca dissiliens | 2 |
| Hybanthus parviflorus | 1 |
| Hybos sp. NCSU-99071974 | 1 |
| Hydnocarpus heterophylla | 5 |
| Hydnophytum formicarum | 2 |
| Hydnora africana | 3 |
| Hydra cf. oligactis | 1 |
| Hydractinia echinata | 2 |
| Hydractinia symbiolongicarpus | 1 |
| Hydra littoralis | 1 |
| Hydra magnipapillata | 19 |
| Hydrangea anomala | 2 |
| Hydrangea arborescens | 5 |
| Hydrangea aspera | 1 |
| Hydrangea macrophylla | 3 |
| Hydrangea peruviana | 2 |
| Hydrangea quercifolia | 2 |
| Hydra oligactis | 4 |
| Hydrastis canadensis | 5 |
| Hydra viridis | 6 |
| Hydra vulgaris | 58 |
| Hydriastele microspadix | 2 |
| Hydriastele wendlandiana | 5 |
| Hydrilla verticillata | 2 |
| Hydrobryum floribundum | 2 |
| Hydrobryum japonicum | 2 |
| Hydrochaeris hydrochaeris | 4 |
| Hydrocharis dubia | 2 |
| Hydrocharis morsus-ranae | 2 |
| Hydroclathrus clathratus | 2 |
| Hydrocleys nymphoides | 2 |
| Hydrocotyle bowlesioides | 2 |
| Hydrocotyle rotundifolia | 1 |
| Hydrocotyle sibthorpioides | 2 |
| Hydrocotyle verticillata | 2 |
| Hydrogenobacter thermophilus | 3 |
| Hydrogenophaga intermedia | 1 |
| Hydrogenophaga pseudoflava | 11 |
| Hydrogenophilus thermoluteolus | 11 |
| Hydrogenovibrio marinus | 3 |
| Hydrolea ovata | 6 |
| Hydrophis cyanocinctus | 1 |
| Hydrophis lapemoides | 1 |
| Hydrophyllum canadense | 3 |
| Hydrophyllum virginianum | 2 |
| Hydropsyche occidentalis | 2 |
| Hydrostachys imbricata | 2 |
| Hydrostachys sp. 'Bremer 3089' | 2 |
| Hydrothrix gardneri | 2 |
| Hygroamblystegium tenax | 3 |
| Hyla japonica | 2 |
| Hylastes porculus | 2 |
| Hylephila phyleus | 2 |
| Hylesinopsis sp. HLD02 | 1 |
| Hylesinopsis sp. HLH11 | 1 |
| Hylesinus varius | 1 |
| Hyles lineata | 3 |
| Hylobates agilis | 1 |
| Hylobates concolor | 4 |
| Hylobates lar | 10 |
| Hylobates leucogenys | 1 |
| Hylobates sp. | 4 |
| Hylobates sp. TIB-201 | 3 |
| Hylobates syndactylus | 2 |
| Hylobittacus apicalis | 4 |
| Hylocharis chrysura | 1 |
| Hylocomiastrum pyrenaicum | 2 |
| Hylocomium splendens | 2 |
| Hylocurus femineus | 1 |
| Hylomyscus alleni | 1 |
| Hylopezus fulviventris | 1 |
| Hylurdrectonus araucariae | 2 |
| Hylurdrectonus pinarius | 2 |
| Hylurgonotus antipodus | 2 |
| Hylurgonotus tuberculatus | 1 |
| Hylurgops rugipennis | 3 |
| Hylurgus micklitzi | 1 |
| Hymenaea courbaril | 1 |
| Hymenaea oblongifolia | 1 |
| Hymenaea protera | 1 |
| Hymenaea verrucosa | 1 |
| Hymenandra wallichii | 5 |
| Hymenanthera alpina | 5 |
| Hymenasplenium cheilosorum | 3 |
| Hymenasplenium obliquissimum | 2 |
| Hymenasplenium unilaterale | 2 |
| Hymenena curdieana | 2 |
| Hymenena falklandica | 2 |
| Hymenena flabelligera | 2 |
| Hymenena fryeana | 2 |
| Hymenena laciniata | 2 |
| Hymenena multipartita | 2 |
| Hymenena palmata | 2 |
| Hymenena venosa | 2 |
| Hymenocallis latifolia | 2 |
| Hymenocallis littoralis | 1 |
| Hymenocladiopsis crustigena | 1 |
| Hymenocoleus hirsutus | 2 |
| Hymenolepis diminuta | 4 |
| Hymenolobium excelsum | 1 |
| Hymenophyllopsis dejecta | 2 |
| Hymenophyllopsis hymenophylloides | 2 |
| Hymenophyllum acanthoides | 2 |
| Hymenophyllum apiculatum | 2 |
| Hymenophyllum baileyanum | 2 |
| Hymenophyllum barbatum | 2 |
| Hymenophyllum deplanchei | 2 |
| Hymenophyllum ferrugineum | 2 |
| Hymenophyllum fucoides | 2 |
| Hymenophyllum fuscum | 2 |
| Hymenophyllum hirsutum | 2 |
| Hymenophyllum lanceolatum | 2 |
| Hymenophyllum oligosorum | 2 |
| Hymenophyllum polyanthos | 3 |
| Hymenophyllum rolandi-principis | 2 |
| Hymenophyllum secundum | 2 |
| Hymenophyllum subdimidiatum | 2 |
| Hymenophyllum tunbrigense | 2 |
| Hymenophyllum wrightii | 2 |
| Hymenosporum flavum | 4 |
| Hynobius leechii | 1 |
| Hynobius retardatus | 1 |
| Hyobanche sanguinea | 1 |
| Hyophorbe lagenicaulis | 6 |
| Hyoscyamus muticus | 6 |
| Hyoscyamus niger | 2 |
| Hyospathe macrorhachis | 2 |
| Hyparrhenia hirta | 2 |
| Hypecoum imberbe | 6 |
| Hypena scabra | 3 |
| Hyperacanthus amoenus | 2 |
| Hypera postica | 1 |
| Hypericum androsaemum | 1 |
| Hypericum perforatum | 4 |
| Hyperolius sp. FB-2000 | 2 |
| Hyphaene coriacea | 2 |
| Hyphaene thebaica | 2 |
| Hyphantria cunea | 14 |
| Hyphantria cunea nucleopolyhedrovirus | 4 |
| Hyphantrophaga hyphantriae | 1 |
| Hyphantrophaga virilis | 1 |
| Hyphessobrycon ecuadoriensis | 1 |
| Hyphomicrobium chloromethanicum | 4 |
| Hyphomicrobium denitrificans | 1 |
| Hyphomicrobium methylovorum | 11 |
| Hyphomicrobium sp. JC17 | 2 |
| Hyphomicrobium sp. X | 2 |
| Hyphomicrobium zavarzinii | 3 |
| Hyphomucor assamensis | 1 |
| Hypnea boergesenii | 2 |
| Hypnea charoides | 2 |
| Hypnea chordacea | 2 |
| Hypnea cornuta | 2 |
| Hypnea flexicaulis | 2 |
| Hypnea japonica | 2 |
| Hypnea musciformis | 2 |
| Hypnea pannosa | 2 |
| Hypnea spinella | 2 |
| Hypnea sp. IzuH1 | 2 |
| Hypnea volubilis | 2 |
| Hypnodendron camptotheca | 1 |
| Hypnodendron dendroides | 1 |
| Hypnodendron menziesii | 2 |
| Hypnodendron vitiense | 2 |
| Hypnum cupressiforme | 3 |
| Hypnum imponens | 1 |
| Hypnum lindbergii | 3 |
| Hypnum plumaeforme | 2 |
| Hypnum tristoviride | 2 |
| Hypobathrum racemosum | 2 |
| Hypocalyptus sophoroides | 2 |
| Hypocrea crassa | 2 |
| Hypocrea gelatinosa | 2 |
| Hypocrea jecorina | 33 |
| Hypocrea koningii | 4 |
| Hypocrea lactea | 1 |
| Hypocrea lixii | 19 |
| Hypocrea minutispora | 2 |
| Hypocrea pilulifera | 2 |
| Hypocrea rufa | 2 |
| Hypocrea schweinitzii | 1 |
| Hypocrea strictipilis | 2 |
| Hypocrea tawa | 2 |
| Hypocrea vinosa | 2 |
| Hypocrea virens | 7 |
| Hypocryphalus mangiferae | 3 |
| Hypodematium crenatum | 2 |
| Hypoderma lineatum | 3 |
| Hypodontium dregei | 3 |
| Hypodontium pomiforme | 2 |
| Hypoestes forskaelii | 2 |
| Hypoglossum anomalum | 1 |
| Hypoglossum hypoglossoides | 2 |
| Hypoglossum sp.1 | 2 |
| Hypoglossum sp.2 | 1 |
| Hypolepis aspidioides | 2 |
| Hypolepis hostilis | 1 |
| Hypolepis muelleri | 2 |
| Hypolepis punctata | 2 |
| Hypolepis sp. Wolf 628 | 2 |
| Hypolytrum bullatum | 2 |
| Hypolytrum nemorum | 5 |
| Hypomyces odoratus | 2 |
| Hypomyces rosellus | 3 |
| Hypophthalmichthys molitrix | 2 |
| Hypoprepia miniata | 3 |
| Hypopterygium tahitense | 2 |
| Hypopterygium tamarisci | 3 |
| Hypotermes xenotermitis | 1 |
| Hypothenemus eruditus | 2 |
| Hypothenemus setosus | 1 |
| Hypothenemus sp. SCA12 | 1 |
| Hypotrichida sp. AL | 2 |
| Hypotrichomonas acosta | 2 |
| Hypoxidea rhizophylla | 1 |
| Hypoxis glabella | 2 |
| Hypoxis leptocarpa | 2 |
| Hypseocharis sp. Beck s.n. | 2 |
| Hypsipyla robusta | 1 |
| Hypsoropha monilis | 1 |
| Hypsoropha sp. | 2 |
| Hyssopus officinalis | 2 |
| Hystrichopsylla talpae | 3 |
| Hystrix brachyurus | 2 |
| Hystrix cristata | 2 |