| Genome Name | No of Superfamily |
| Abacion magnum | 2 |
| Abagrotis alternata | 3 |
| Abatia parviflora | 5 |
| Abax parallelepipedus | 1 |
| Abelia triflora | 4 |
| Abelson murine leukemia virus | 2 |
| Abies alba | 2 |
| Abies bracteata | 2 |
| Abies fabri | 2 |
| Abies firma | 2 |
| Abies grandis | 6 |
| Abies homolepis | 2 |
| Abies magnifica | 3 |
| Abies mariesii | 2 |
| Abies numidica | 2 |
| Abies sachalinensis | 2 |
| Abies sibirica | 2 |
| Abietinella abietina | 2 |
| Abildgaardia ovata | 3 |
| Abiotrophia defectiva | 2 |
| Abobra tenuifolia | 2 |
| Abolboda poarchon | 2 |
| Abrocoma bennettii | 1 |
| Abroma augustum | 6 |
| Abrophyllum ornans | 5 |
| Abroteia orbicularis | 2 |
| Abroteia sp. SF2000 | 2 |
| Abrothrix jelskii | 1 |
| Abrus precatorius | 5 |
| Absidia blakesleeana | 2 |
| Absidia coerulea | 2 |
| Absidia glauca | 3 |
| Absidia repens | 2 |
| Absidia zychae | 1 |
| Abutilon theophrasti | 1 |
| Acacia confusa | 1 |
| Acacia farnesiana | 2 |
| Acacia mangium x Acacia auriculiformis | 1 |
| Acalolepta luxuriosa | 1 |
| Acalypha rhomboidea | 2 |
| Acalyptophis peroni | 1 |
| Acanthamoeba castellanii | 29 |
| Acanthamoeba culbertsoni | 1 |
| Acanthamoeba healyi | 3 |
| Acanthamoeba polyphaga | 2 |
| Acanthamoeba sp. | 1 |
| Acanthamoeba sp. 4b3 | 1 |
| Acanthephippium mantinianum | 2 |
| Acanthisitta chloris | 2 |
| Acanthobrahmaea europaea | 1 |
| Acanthocalyx albus | 2 |
| Acanthocheilonema viteae | 13 |
| Acanthogorgia sp. USNM-94442 | 1 |
| Acanthokara kaputensis | 1 |
| Acantholimon acerosum | 2 |
| Acanthopagrus butcheri | 1 |
| Acanthopagrus latus | 2 |
| Acanthopagrus schlegelii | 1 |
| Acanthopanax sciadophylloides | 2 |
| Acanthopanax trifoliatus | 2 |
| Acanthopeltis japonica | 2 |
| Acanthophis antarcticus | 2 |
| Acanthophoenix rubra | 2 |
| Acanthorrhynchium papillatum | 2 |
| Acanthotomicus tanganyikaensis | 1 |
| Acanthus longifolius | 1 |
| Acanthus montanus | 2 |
| Acarteroptera recta | 2 |
| Acarus siro | 1 |
| Acaulon muticum | 2 |
| Acaulospora laevis | 1 |
| Accipiter gentilis | 1 |
| Aceratium ferrugineum | 4 |
| Acer negundo | 1 |
| Acer pseudoplatanus | 1 |
| Acer saccharum | 4 |
| Acetabularia acetabulum | 12 |
| Acetabularia cliftonii | 5 |
| Acetabularia mediterranea | 1 |
| Acetivibrio cellulolyticus | 2 |
| Acetobacter aceti | 10 |
| Acetobacterium dehalogenans | 2 |
| Acetobacterium woodii | 5 |
| Acetobacter pasteurianus | 14 |
| Acetobacter polyoxogenes | 4 |
| Acetomicrobium flavidum | 2 |
| Acharia tragodes | 4 |
| Acheta domesticus | 1 |
| Achillea millefolium | 2 |
| Achimenes skinneri | 2 |
| Achlya ambisexualis | 1 |
| Achlya bisexualis | 4 |
| Achlya klebsiana | 4 |
| Achlys triphylla | 2 |
| Acholeplasma axanthum | 2 |
| Acholeplasma laidlawii | 20 |
| Acholeplasma palmae | 2 |
| Acholeplasma phage L2 | 1 |
| Achromobacter cycloclastes | 5 |
| Achromobacter lyticus | 2 |
| Achromobacter obae | 1 |
| Achromobacter piechaudii | 1 |
| Achromobacter sp. WM111 | 1 |
| Achromobacter xylosoxidans | 7 |
| Acianthus exsertus | 2 |
| Acicarpha tribuloides | 6 |
| Acidaminococcus fermentans | 3 |
| Acidianus ambivalens | 25 |
| Acidianus infernus | 1 |
| Acidiphilium multivorum | 1 |
| Acidiphilium rubrum | 3 |
| Acidithiobacillus caldus | 1 |
| Acidithiobacillus ferrooxidans | 51 |
| Acidocella facilis | 2 |
| Acidodontium heteroneuron | 1 |
| Acidodontium ramicola | 1 |
| Acidodontium seminerve | 1 |
| Acidothermus cellulolyticus | 2 |
| Acidovorax avenae | 4 |
| Acidovorax delafieldii | 1 |
| Acidovorax facilis | 1 |
| Acidovorax sp. 2FB7 | 1 |
| Acineta chrysantha | 2 |
| Acinetobacter baumannii | 16 |
| Acinetobacter calcoaceticus | 65 |
| Acinetobacter genomosp. 11 | 4 |
| Acinetobacter genomosp. 3 | 1 |
| Acinetobacter genomosp. 6 | 1 |
| Acinetobacter glutaminasificans | 1 |
| Acinetobacter haemolyticus | 3 |
| Acinetobacter johnsonii | 9 |
| Acinetobacter junii | 5 |
| Acinetobacter lwoffii | 19 |
| Acinetobacter radioresistens | 8 |
| Acinetobacter sp. | 514 |
| Acinetobacter sp. 93A2 | 4 |
| Acinetobacter sp. AC423D | 4 |
| Acinetobacter sp. AD321 | 4 |
| Acinetobacter sp. ADP1 | 516 |
| Acinetobacter sp. BD413 | 2 |
| Acinetobacter sp. BW3 | 3 |
| Acinetobacter sp. EB104 | 4 |
| Acinetobacter sp. M-1 | 10 |
| Acinetobacter sp. NCIMB9871 | 3 |
| Acinetobacter sp. no. 6 | 1 |
| Acinetobacter sp. RA3849 | 1 |
| Acinetobacter sp. SE19 | 5 |
| Acinetospora crinita | 2 |
| Acinonyx jubatus | 1 |
| Acioa guianensis | 2 |
| Acion hookeri | 2 |
| Acipenser baerii | 2 |
| Acipenser brevirostrum | 2 |
| Acipenser fulvescens | 1 |
| Acipenser gueldenstaedtii | 2 |
| Acipenser medirostris | 1 |
| Acipenser oxyrhynchus | 1 |
| Acipenser sinensis | 1 |
| Acipenser transmontanus | 3 |
| Acis autumnalis | 2 |
| Ackama paniculosa | 1 |
| Acmanthera latifolia | 2 |
| Acmena smithii | 2 |
| Acmopyle pancheri | 1 |
| Acmopyle sahniana | 2 |
| Acoela sp. LOTHR-2001 | 1 |
| Acokanthera oblongifolia | 2 |
| Acomys cahirinus | 4 |
| Acomys wilsoni | 1 |
| Aconophora flavipes | 2 |
| Acorus calamus | 9 |
| Acorus gramineus | 5 |
| Acosmium dasycarpum | 2 |
| Acrasis rosea | 9 |
| Acraspisa sp. MEI089470 | 2 |
| Acraspisa sp. NCSU-0300001 | 2 |
| Acremonium cellulolyticus | 2 |
| Acremonium chrysogenum | 15 |
| Acremonium murorum | 1 |
| Acremonium sp. HI-25 | 1 |
| Acridocarpus natalitius | 2 |
| Acrocarpus sp. JJD-2001 | 2 |
| Acrocephalus arundinaceus | 1 |
| Acrocladium auriculatum | 1 |
| Acrocomia aculeata | 2 |
| Acronicta sp. AM-1997 | 2 |
| Acronychia acidula | 2 |
| Acrophyllum australe | 2 |
| Acropora formosa | 2 |
| Acropora millepora | 8 |
| Acropora tenuis | 1 |
| Acroporium pungens | 3 |
| Acroporium stramineum | 2 |
| Acrosathe sp. | 2 |
| Acrosiphonia duriuscula | 1 |
| Acrosorium decumbens | 2 |
| Acrosorium maculatum | 2 |
| Acrosorium polyneurum | 2 |
| Acrosorium sp. 1 | 2 |
| Acrosorium sp. 2 | 2 |
| Acrosorium venulosum | 2 |
| Acrostichum aureum | 2 |
| Acrothrix pacifica | 2 |
| Acrotriche divaricata | 2 |
| Acryllium vulturinum | 1 |
| Acsmithia elliptica | 2 |
| Actias artemis | 1 |
| Actias isis | 3 |
| Actias luna | 3 |
| Actias selene | 4 |
| Actinia equina | 5 |
| Actinia tenebrosa | 1 |
| Actinidia arguta | 2 |
| Actinidia chinensis | 12 |
| Actinidia deliciosa | 6 |
| Actinidia kolomikta | 1 |
| Actiniopteris australis | 1 |
| Actiniopteris radiata | 2 |
| Actinobacillus actinomycetemcomitans | 59 |
| Actinobacillus cf. equuli | 2 |
| Actinobacillus equuli | 1 |
| Actinobacillus pleuropneumoniae | 54 |
| Actinobacillus sp. CCUG 19799 | 2 |
| Actinobacillus suis | 1 |
| Actinobacillus ureae | 1 |
| Actinomadura citrea | 1 |
| Actinomadura hibisca | 3 |
| Actinomadura madurae | 1 |
| Actinomadura rubrobrunea | 1 |
| Actinomadura sp. | 3 |
| Actinomadura spadix | 1 |
| Actinomadura verrucosospora | 5 |
| Actinomucor elegans | 2 |
| Actinomyces naeslundii | 14 |
| Actinomyces sp. | 1 |
| Actinomyces sp. 40 | 2 |
| Actinomyces viscosus | 4 |
| Actinoplanes missouriensis | 1 |
| Actinoplanes sp. | 1 |
| Actinoplanes sp. ATCC 31351 | 1 |
| Actinoplanes teichomyceticus | 2 |
| Actinopolyspora halophila | 1 |
| Actinoscirpus grossus | 2 |
| Actinosynnema pretiosum | 21 |
| Actinote genetrix | 1 |
| Actornithophilus ceruleus | 2 |
| Actornithophilus piceus | 1 |
| Actorthia micans | 2 |
| Acupalpa albitarsa | 2 |
| Acupalpa divisa | 2 |
| Acupalpa fascipennis | 2 |
| Acupalpa sp. 1 | 2 |
| Acute bee paralysis virus | 2 |
| Acyrthosiphon kondoi | 1 |
| Acyrthosiphon kondoi endosymbiont | 15 |
| Acyrthosiphon pisum | 4 |
| Acytostelium leptosomum | 2 |
| Adalia bipunctata | 1 |
| Adalia decempunctata | 1 |
| Adamsia carciniopados | 1 |
| Adansonia rubrostipa | 5 |
| Addax nasomaculatus | 1 |
| Adela purpurea | 1 |
| Adela trigrapha | 1 |
| Adelobotrys boissieriana | 2 |
| Adelothecium bogotense | 1 |
| Adenandra uniflora | 5 |
| Adenanthera pavonina | 1 |
| Adenanthos obovatus | 5 |
| Adenia digitata | 2 |
| Adenium obesum | 2 |
| Adenocarpus complicatus | 3 |
| Adenocarpus telonensis | 2 |
| Adenocystis utricularis | 2 |
| Adenodolichos rupestris | 2 |
| Adenophorus abietinus | 4 |
| Adenophorus epigaeus | 4 |
| Adenophorus haalilioanus | 4 |
| Adenophorus montanus | 2 |
| Adenophorus oahuensis | 2 |
| Adenophorus periens | 4 |
| Adenophorus pinnatifidus | 4 |
| Adenophorus tamariscinus | 2 |
| Adenophorus tripinnatifidus | 2 |
| Adenostoma sparsifolium | 2 |
| Adenothamnus validus | 1 |
| Adesmia exilis | 2 |
| Adiantum capillus-veneris | 11 |
| Adiantum pedatum | 2 |
| Adiantum raddianum | 6 |
| Adinandra dumosa | 5 |
| Adinandra formosana | 2 |
| Adineta vaga | 1 |
| Adisura bella | 1 |
| Adisura purgata | 1 |
| Adolphia infesta | 2 |
| Adonis palaestina | 1 |
| Adoxa moschatellina | 2 |
| Adoxophyes honmai nucleopolyhedrovirus | 1 |
| Adoxophyes orana granulovirus | 1 |
| Aechmea chantinii | 5 |
| Aechmea dealbata | 1 |
| Aedeomyia squamipennis | 1 |
| Aedes aegypti | 72 |
| Aedes albopictus | 15 |
| Aegialitis annulata | 2 |
| Aegiceras corniculatum | 7 |
| Aegilops bicornis | 1 |
| Aegilops crassa | 2 |
| Aegilops longissima | 1 |
| Aegilops searsii | 1 |
| Aegilops sharonensis | 1 |
| Aegilops speltoides | 3 |
| Aegilops tauschii | 15 |
| Aegilops uniaristata | 3 |
| Aegithalos iouschensis | 2 |
| Aegithina tiphia | 2 |
| Aegle marmelos | 5 |
| Aegolius funereus | 1 |
| Aegopodium podagraria | 3 |
| Aegypius monachus | 1 |
| Aellopos tantalus | 3 |
| Aeodes orbitosa | 2 |
| Aeodes ulvoidea | 1 |
| Aepyceros melampus | 1 |
| Aepypodius arfakianus | 1 |
| Aequorea macrodactyla | 2 |
| Aequorea parva | 1 |
| Aequorea victoria | 3 |
| Aerangis calligera | 2 |
| Aeranthes ramosa | 2 |
| Aerides japonica | 1 |
| Aerococcus viridans | 2 |
| Aeromonas allosaccharophila | 1 |
| Aeromonas bestiarum | 1 |
| Aeromonas culicicola | 2 |
| Aeromonas encheleia | 1 |
| Aeromonas enteropelogenes | 4 |
| Aeromonas eucrenophila | 1 |
| Aeromonas hydrophila | 58 |
| Aeromonas jandaei | 6 |
| Aeromonas punctata | 17 |
| Aeromonas salmonicida | 27 |
| Aeromonas schubertii | 1 |
| Aeromonas sobria | 5 |
| Aeromonas sp. | 3 |
| Aeromonas sp. 10S-24 | 4 |
| Aeromonas veronii | 4 |
| Aeropyrum pernix | 398 |
| Aeschynanthus micranthus | 2 |
| Aeschynomene americana | 2 |
| Aeschynomene indica | 2 |
| Aesculus pavia | 4 |
| Aeshna cyanea | 1 |
| Aethia pygmaea | 1 |
| Aethionema grandiflora | 2 |
| Aextoxicon punctatum | 5 |
| Affinetrina eburnea | 1 |
| Afgekia mahidolae | 1 |
| Afgekia sericea | 2 |
| Afipia felis | 1 |
| African green monkey polyomavirus | 2 |
| African horsesickness virus | 5 |
| African swine fever virus | 18 |
| Afrocarpus falcatus | 2 |
| Afrocarpus gracilior | 2 |
| Afropavo congensis | 1 |
| Afrostyrax sp. Cheek 5007 | 5 |
| Agalinis sp. CWD 90.129 | 1 |
| Aganope sp. JJD-2001 | 2 |
| Agapanthus africanus | 5 |
| Agapanthus campanulatus | 2 |
| Agapophytus aterrimus | 2 |
| Agapophytus australasiae | 2 |
| Agapophytus pallidicornis | 2 |
| Agapophytus queenslandi | 2 |
| Agapophytus sp. BMW-1999b | 2 |
| Agapostemon leunculus | 2 |
| Agardhiella ramosissima | 2 |
| Agardhiella sp. | 2 |
| Agardhiella subulata | 2 |
| Agaricia agaricites | 1 |
| Agaricia fragilis | 1 |
| Agaricus bisporus | 38 |
| Agarista populifolia | 2 |
| Agarista salicifolia | 2 |
| Agarum clathratum | 2 |
| Agastache foeniculum | 1 |
| Agastache mexicana | 2 |
| Agastache rugosa | 3 |
| Agastachys odorata | 3 |
| Agathiphaga queenslandensis | 1 |
| Agathisanthemum bojeri | 2 |
| Agathis atropurpurea | 2 |
| Agathis australis | 5 |
| Agathis borneensis | 2 |
| Agathis dammara | 2 |
| Agathis lanceolata | 2 |
| Agathis macrophylla | 2 |
| Agathis montana de Laub. | 2 |
| Agathis moorei | 2 |
| Agathis obtusa | 2 |
| Agathis ovata | 2 |
| Agathis palmerstonii | 2 |
| Agathis robusta | 3 |
| Agathis vitiensis | 2 |
| Agave bracteosa | 1 |
| Agave ghiesbreghtii | 5 |
| Agelaius cyanopus | 1 |
| Agelaius phoeniceus | 2 |
| Agelenopsis aperta | 3 |
| Agkistrodon bilineatus | 1 |
| Agkistrodon contortrix | 4 |
| Agkistrodon piscivorus | 4 |
| Aglaomorpha coronans | 2 |
| Aglaomorpha meyeniana | 2 |
| Aglaothamnion byssoides | 2 |
| Aglaothamnion gallicum | 2 |
| Aglaothamnion halliae | 2 |
| Aglaothamnion hookeri | 2 |
| Aglaothamnion neglectum | 3 |
| Aglaothamnion pseudobyssoides | 2 |
| Aglaothamnion roseum | 2 |
| Aglaothamnion sepositum | 2 |
| Aglaothamnion sp. Spain | 2 |
| Aglaothamnion sp. USA | 2 |
| Aglaothamnion tenuissimum | 2 |
| Aglaothamnion tripinnatum | 2 |
| Aglyptodactylus madagascariensis | 1 |
| Agouti paca | 1 |
| Agouti taczanowskii | 2 |
| Agrimonia parviflora | 2 |
| Agriornis montana | 1 |
| Agrius convolvuli | 1 |
| Agrobacterium aurantiacum | 1 |
| Agrobacterium rhizogenes | 24 |
| Agrobacterium sp. | 2 |
| Agrobacterium sp. ATCC 21400 | 1 |
| Agrobacterium sp. IP I-671 | 5 |
| Agrobacterium tumefaciens | 585 |
| Agrobacterium vitis | 11 |
| Agrocybe aegerita | 3 |
| Agrocybe pediades | 1 |
| Agromyces mediolanus | 2 |
| Agropyron cristatum | 7 |
| Agrostemma githago | 4 |
| Agrostis stolonifera | 1 |
| Agrotis ipsilon | 7 |
| Agrotis segetum | 2 |
| Agrotis segetum granulovirus | 1 |
| Ahnfeltia fastigiata | 2 |
| Ahnfeltia plicata | 2 |
| Ahnfeltiopsis complicata | 2 |
| Ahnfeltiopsis concinna | 2 |
| Ahnfeltiopsis devoniensis | 2 |
| Ahnfeltiopsis durvillaei | 2 |
| Ahnfeltiopsis flabelliformis | 2 |
| Ahnfeltiopsis furcellata | 2 |
| Ahnfeltiopsis gigartinoides | 2 |
| Ahnfeltiopsis glomerata | 2 |
| Ahnfeltiopsis humilis | 2 |
| Ahnfeltiopsis intermedia | 2 |
| Ahnfeltiopsis johnstonii | 2 |
| Ahnfeltiopsis leptophylla | 2 |
| Ahnfeltiopsis linearis | 2 |
| Ahnfeltiopsis paradoxa | 2 |
| Ahnfeltiopsis paradoxus | 2 |
| Ahnfeltiopsis polyclada | 1 |
| Ahnfeltiopsis sp. FredericqS 6.ix.93 | 2 |
| Ahnfeltiopsis svensonii | 2 |
| Ahnfeltiopsis vermicularis | 2 |
| Aichi virus | 1 |
| Aidia micrantha | 2 |
| Aidia racemosa | 2 |
| Ailanthus altissima | 4 |
| Ailuropoda melanoleuca | 4 |
| Ailurus fulgens | 2 |
| Aiphanes aculeata | 5 |
| Aipysurus laevis | 2 |
| Aix sp. | 1 |
| Aix sponsa | 1 |
| Ajellomyces capsulatus | 25 |
| Ajellomyces dermatitidis | 2 |
| Ajuga chamaepitys | 2 |
| Ajuga reptans | 3 |
| Akania bidwillii | 4 |
| Akebia quinata | 5 |
| Akebia trifoliata | 2 |
| Akkesiphycus lubricum | 2 |
| Akodon cursor | 1 |
| Alangium chinense | 2 |
| Alangium kurzii | 2 |
| Alangium sp. Chase 2541 | 3 |
| Alania endlicheri | 2 |
| Alaria esculenta | 4 |
| Alauda arvensis | 2 |
| Alberta magna | 2 |
| Albinaria caerulea | 1 |
| Albinaria turrita | 1 |
| Albizia julibrissin | 4 |
| Albuca shawii | 2 |
| Alcaligenes faecalis | 26 |
| Alcaligenes hydrogenophilus | 3 |
| Alcaligenes latus | 3 |
| Alcaligenes sp. | 9 |
| Alcaligenes sp. AL3007 | 2 |
| Alcaligenes sp. CT14 | 2 |
| Alcaligenes sp. JMP133 | 1 |
| Alcaligenes sp. O-1 | 2 |
| Alcaligenes sp. SH-69 | 2 |
| Alcaligenes sp. STC1 | 1 |
| Alcaligenes sp. XY-234 | 1 |
| Alcanivorax borkumensis | 6 |
| Alcanivorax jadensis | 2 |
| Alcanivorax sp. 12W-23 | 2 |
| Alcanivorax sp. Abu-1 | 2 |
| Alcanivorax sp. Can-1 | 2 |
| Alcanivorax sp. Can-2 | 2 |
| Alcanivorax sp. Cro-4 | 2 |
| Alcanivorax sp. Haw1 | 2 |
| Alcanivorax sp. Haw-2 | 2 |
| Alcanivorax sp. I4 | 2 |
| Alcanivorax sp. Mho1 | 2 |
| Alcanivorax sp. Nag1 | 2 |
| Alcanivorax sp. Nag-2 | 2 |
| Alcanivorax sp. Oha-1 | 2 |
| Alcanivorax sp. OM-1 | 2 |
| Alcanivorax sp. OM-2 | 2 |
| Alcanivorax sp. PR-1 | 2 |
| Alcanivorax sp. ST-1 | 2 |
| Alcanivorax sp. ST-T3 | 2 |
| Alcanivorax sp. Tak-1 | 2 |
| Alcedo atthis | 1 |
| Alcelaphine herpesvirus 1 | 7 |
| Alces alces | 3 |
| Alchemilla mollis | 2 |
| Alchisme sp. | 2 |
| Alcolapia grahami | 6 |
| Aldabrachelys elephantina | 1 |
| Alder yellows phytoplasma | 2 |
| Aldina latifolia | 2 |
| Aldrovanda vesiculosa | 5 |
| Alectoris chukar | 1 |
| Alectra orobanchoides | 3 |
| Alectra sessiliflora | 3 |
| Alectura lathami | 1 |
| Aleochara bilineata | 1 |
| Aleochara bimaculata | 1 |
| Aleochara binotata | 1 |
| Aleochara bipustulata | 1 |
| Aleochara bisolata | 1 |
| Aleochara brevipennis | 1 |
| Aleochara castaneipennis | 1 |
| Aleochara cf. chrysorrhoa | 1 |
| Aleochara clavicornis | 1 |
| Aleochara curtidens | 1 |
| Aleochara curtula | 1 |
| Aleochara depressa | 1 |
| Aleochara fortepunctata | 1 |
| Aleochara funebris | 1 |
| Aleochara grisea | 1 |
| Aleochara haematoptera | 1 |
| Aleochara heeri | 1 |
| Aleochara inconspicua | 1 |
| Aleochara intricata | 1 |
| Aleochara laevigata | 1 |
| Aleochara lanuginosa | 1 |
| Aleochara lata | 1 |
| Aleochara lustrica | 1 |
| Aleochara mahagi | 1 |
| Aleochara marginipennis | 1 |
| Aleochara milleri | 1 |
| Aleochara moesta | 1 |
| Aleochara morion | 1 |
| Aleochara nigra | 1 |
| Aleochara notula | 1 |
| Aleochara obscurella | 1 |
| Aleochara oxypodia | 1 |
| Aleochara pacifica | 1 |
| Aleochara rubricalis | 1 |
| Aleochara spadicea | 1 |
| Aleochara stichai | 1 |
| Aleochara sulcicollis | 1 |
| Aleochara transvaalensis | 1 |
| Aleochara tristis | 1 |
| Aleochara trisulcata | 1 |
| Aleochara trivialis | 1 |
| Aleochara valida | 1 |
| Aleochara verna | 1 |
| Alepidosceles sp. BBSL-221420 | 1 |
| Alethocladus corymbosus | 2 |
| Aletris farinosa | 2 |
| Alexandrium fundyense | 2 |
| Alexandrium tamarense | 1 |
| Alexgeorgea ganopoda | 2 |
| Alibertia edulis | 2 |
| Alicyclobacillus acidocaldarius | 9 |
| Alicyclobacillus acidoterrestris | 1 |
| Alishewanella fetalis | 2 |
| Alisma plantago-aquatica | 4 |
| Alkhurma virus | 3 |
| Allactaga elater | 1 |
| Allagoptera arenaria | 3 |
| Allamanda cathartica | 2 |
| Allancastria cerisyi | 2 |
| Allantoma lineata | 2 |
| Allenopithecus nigroviridis | 2 |
| Alliaria petiolata | 1 |
| Alligator mississippiensis | 16 |
| Allium altaicum | 5 |
| Allium cepa | 20 |
| Allium macrostemon | 1 |
| Allium porrum | 9 |
| Allium sativum | 5 |
| Allium siculum | 2 |
| Allium subhirsutum | 2 |
| Allium tuberosum | 2 |
| Allium ursinum | 1 |
| Allocasuarina littoralis | 2 |
| Allocasuarina muelleriana | 2 |
| Allocasuarina torulosa | 2 |
| Allochromatium vinosum | 32 |
| Allogromia laticollaris | 2 |
| Allogromia sp. | 1 |
| Allolobophora sp. | 2 |
| Allomyces macrogynus | 6 |
| Allomyrina dichotoma | 1 |
| Alloplectus meridensis | 2 |
| Allothereua maculata | 1 |
| Alloxylon wickhamii | 3 |
| Alloxytropus sp. | 2 |
| Alluaudia procera | 2 |
| Alniphagus aspericollis | 1 |
| Alniphyllum fortunei | 2 |
| Alnus firma | 2 |
| Alnus glutinosa | 5 |
| Alnus incana | 1 |
| Alnus rubra | 1 |
| Alocasia macrorrhizos | 2 |
| Aloe arborescens | 3 |
| Aloe bakeri | 3 |
| Aloe vera | 5 |
| Alonsoa unilabiata | 3 |
| Alopecurus myosuroides | 6 |
| Alopex lagopus | 2 |
| Alophia veracruzana | 3 |
| Alophosia azorica | 2 |
| Alopias pelagicus | 3 |
| Alopias superciliosus | 2 |
| Alopias vulpinus | 2 |
| Alouatta belzebul | 1 |
| Alouatta caraya | 1 |
| Alouatta fusca | 1 |
| Alouatta palliata | 1 |
| Alouatta seniculus | 3 |
| Alouatta sp. | 1 |
| Alpheopsis trigonus | 1 |
| Alpheus amblyonyx | 1 |
| Alpheus antepaenultimus A | 1 |
| Alpheus antepaenultimus B | 1 |
| Alpheus bouvieri | 2 |
| Alpheus canalis blue antennae | 1 |
| Alpheus canalis orange antennae | 2 |
| Alpheus chacei | 2 |
| Alpheus colombiensis | 1 |
| Alpheus cristulifrons | 1 |
| Alpheus cylindricus | 2 |
| Alpheus estuariensis | 1 |
| Alpheus floridanus | 4 |
| Alpheus formosus | 1 |
| Alpheus hebes | 2 |
| Alpheus latus | 1 |
| Alpheus lottini | 1 |
| Alpheus malleator | 1 |
| Alpheus normanni | 2 |
| Alpheus nuttingi | 1 |
| Alpheus panamensis | 1 |
| Alpheus paracrinitus | 2 |
| Alpheus rostratus | 1 |
| Alpheus saxidomus | 2 |
| Alpheus schmitti | 1 |
| Alpheus sulcatus | 1 |
| Alpheus tenuis | 1 |
| Alpheus thomasi | 1 |
| Alpheus umbo | 1 |
| Alpheus websteri | 1 |
| Alphitonia excelsa | 2 |
| Alseis lugonis | 2 |
| Alseuosmia macrophylla | 6 |
| Alstonia scholaris | 3 |
| Alstroemeria andina | 2 |
| Alstroemeria angustifolia | 2 |
| Alstroemeria aurantiaca | 1 |
| Alstroemeria aurea | 2 |
| Alstroemeria caryophyllaea | 3 |
| Alstroemeria graminea | 2 |
| Alstroemeria isabellana | 2 |
| Alstroemeria patagonica | 2 |
| Alstroemeria pelegrina | 2 |
| Alstroemeria pygmaea | 3 |
| Alstroemeria sp. | 2 |
| Altensteinia paleacea | 2 |
| Alternaria alternata | 21 |
| Alternaria brassicae | 2 |
| Alternaria brassicicola | 3 |
| Alternaria citri | 1 |
| Alternaria linicola | 2 |
| Alteromonas agarilytica | 3 |
| Alteromonas macleodii | 4 |
| Alteromonas sp. | 5 |
| Alteromonas sp. ATCC 43554 | 1 |
| Alteromonas sp. M1 | 1 |
| Alteromonas sp. O-7 | 10 |
| Altingia excelsa | 5 |
| Altingia sp. RBGE | 2 |
| Alvaradoa amorphoides | 5 |
| Alvimia gracilis | 1 |
| Alviniconcha hessleri | 1 |
| Alzatea verticillata | 2 |
| Amaeana trilobata | 1 |
| Amanita muscaria | 4 |
| Amaracarpus sp. Parvis 680 | 2 |
| Amaranthus caudatus | 4 |
| Amaranthus hypochondriacus | 10 |
| Amaranthus powellii | 2 |
| Amaranthus retroflexus | 2 |
| Amaranthus sp. | 2 |
| Amaranthus tricolor | 8 |
| Amaranthus viridis | 1 |
| Amaroria soulameoides | 4 |
| Amaryllis belladonna | 2 |
| Amasa versicolor | 1 |
| Amastigomonas debruynei | 2 |
| Amauroderma rude | 2 |
| Amazonetta brasiliensis | 1 |
| Ambloplites rupestris | 1 |
| Amblyodon dealbatus | 4 |
| Amblyomma americanum | 6 |
| Amblyomma hebraeum | 1 |
| Amblyomma sp. 'Amb2' | 2 |
| Amblysomus hottentotus | 4 |
| Amblystegium fluviatile | 1 |
| Amborella trichopoda | 8 |
| Ambrosia artemisiifolia | 3 |
| Ambrosia elatior | 1 |
| Ambrosia trifida | 1 |
| Ambrosiodmus aegir | 1 |
| Ambrosiodmus colossus | 1 |
| Ambrosiodmus compressus | 1 |
| Ambystoma maculatum | 2 |
| Ambystoma mexicanum | 40 |
| Ambystoma texanum | 1 |
| Ambystoma tigrinum | 14 |
| Ameiva ameiva | 1 |
| Amelanchier alnifolia | 3 |
| Amentotaxus argotaenia | 2 |
| American plum line pattern virus | 1 |
| Ametadoria harrisinae | 1 |
| Amia calva | 2 |
| Amianthium muscitoxicum | 5 |
| Aminobacter aminovorans | 2 |
| Aminobacter sp. IMB-1 | 5 |
| Aminomonas aminovorus | 1 |
| Amiota picta | 1 |
| Amischotolype monosperma | 2 |
| Amma blancheae | 2 |
| Ammandra decasperma | 2 |
| Ammannia baccifera | 2 |
| Ammodytes marinus | 3 |
| Ammonia sp. | 1 |
| Ammothella biunguiculata | 1 |
| Ammotragus lervia | 1 |
| Amoeba proteus | 2 |
| Amoeba proteus symbiotic bacterium | 6 |
| Amoebidium parasiticum | 3 |
| Amoreuxia wrightii | 2 |
| Amorpha fruticosa | 4 |
| Amorphophallus abyssinicus | 2 |
| Amorphophallus angolensis | 2 |
| Amorphophallus ankarana | 2 |
| Amorphophallus baumannii | 2 |
| Amorphophallus beccarii | 2 |
| Amorphophallus brevispathus | 2 |
| Amorphophallus canaliculatus | 2 |
| Amorphophallus cirrifer | 2 |
| Amorphophallus coaetaneus | 2 |
| Amorphophallus commutatus | 2 |
| Amorphophallus corrugatus | 2 |
| Amorphophallus decus-silvae | 2 |
| Amorphophallus dracontioides | 2 |
| Amorphophallus eburneus | 2 |
| Amorphophallus galbra | 3 |
| Amorphophallus henryi | 2 |
| Amorphophallus hirsutus | 2 |
| Amorphophallus hirtus | 2 |
| Amorphophallus hottae | 2 |
| Amorphophallus konjac | 3 |
| Amorphophallus krausei | 2 |
| Amorphophallus lambii | 2 |
| Amorphophallus lewallei | 2 |
| Amorphophallus longituberosus | 2 |
| Amorphophallus margaritifer | 2 |
| Amorphophallus maxwellii | 2 |
| Amorphophallus napiger | 2 |
| Amorphophallus paeoniifolius | 2 |
| Amorphophallus palawanensis | 2 |
| Amorphophallus pingbianensis | 2 |
| Amorphophallus pusillus | 2 |
| Amorphophallus rhizomatosus | 2 |
| Amorphophallus sagittarius | 2 |
| Amorphophallus smithsonianus | 2 |
| Amorphophallus sumawongii | 2 |
| Amorphophallus symonianus | 2 |
| Amorphophallus titanum | 2 |
| Amorphophallus variabilis | 2 |
| Amorphophallus zenkeri | 2 |
| Amorphotheca resinae | 2 |
| Ampelocera hottleyi | 1 |
| Ampelocissus thyrsiflora | 2 |
| Ampelopsis brevipedunculata | 2 |
| Ampelopsis megalophylla | 2 |
| Ampelozizyphus amazonicus | 2 |
| Ampharetidae sp. | 2 |
| Amphianthus pusillus | 3 |
| Amphiasma luzuloides | 2 |
| Amphibacillus xylanus | 1 |
| Amphiblemma cymosum | 2 |
| Amphibolis antarctica | 2 |
| Amphicarpaea bracteata | 2 |
| Amphicarpaea edgeworthii | 2 |
| Amphicteis dalmatica | 1 |
| Amphidasya ambigua | 2 |
| Amphidinium carterae | 2 |
| Amphidinium operculatum | 2 |
| Amphidium californicum | 3 |
| Amphidium lapponicum | 3 |
| Amphiglena terebro | 1 |
| Amphipholis squamata | 1 |
| Amphipogon strictus | 2 |
| Amphipyra pyramidoides | 3 |
| Amphiroa fragilissima | 2 |
| Amphitecna apiculata | 2 |
| Amphitrite ornata | 1 |
| Amphitrite sp. | 2 |
| Amphitritides harpa | 1 |
| Amphiuma means | 1 |
| Amphiuma tridactylum | 1 |
| Amsacta moorei entomopoxvirus | 26 |
| Amurotaenia decidua | 1 |
| Amur virus | 1 |
| Amycolatopsis azurea | 2 |
| Amycolatopsis lactamdurans | 3 |
| Amycolatopsis mediterranei | 47 |
| Amycolatopsis methanolica | 5 |
| Amycolatopsis orientalis | 29 |
| Amycolatopsis sp. | 2 |
| Amycolatopsis sp. HR167 | 2 |
| Amylomyces rouxii | 4 |
| Amyrsidea spicula | 1 |
| Anabaena azollae | 8 |
| Anabaena circinalis | 1 |
| Anabaena cylindrica | 1 |
| Anabaena sp. | 43 |
| Anabaena sp. 90 | 5 |
| Anabaena sp. KAC 16 | 1 |
| Anabaena sp. L-31 | 5 |
| Anabaena variabilis | 33 |
| Anabaenopsis circularis | 1 |
| Anabarhynchus tristis | 2 |
| Anableps anableps | 1 |
| Anacamptodon splachnoides | 3 |
| Anacardium occidentale | 1 |
| Anadara grandis | 1 |
| Anadara trapezia | 1 |
| Anaerobiospirillum succiniciproducens | 4 |
| Anaerocellum thermophilum | 6 |
| Anaeroplasma abactoclasticum | 2 |
| Anagallis arvensis | 4 |
| Anagallis tenella | 3 |
| Anagapetus debilis | 2 |
| Anagrapha falcifera | 3 |
| Anagrapha falcifera nuclear polyhedrosis virus | 3 |
| Anagyris foetida | 2 |
| Ananas comosus | 7 |
| Ananthacorus angustifolius | 2 |
| Anaplasma centrale | 2 |
| Anaplasma marginale | 5 |
| Anaplasma phagocytophilum | 22 |
| Anaplasma platys | 3 |
| Anarhichas lupus | 1 |
| Anarhichas minor | 4 |
| Anarthria polyphylla | 2 |
| Anarthria scabra | 3 |
| Anas penelope | 1 |
| Anas platyrhynchos | 34 |
| Anas sp. | 3 |
| Anas specularioides | 3 |
| Anas strepera | 2 |
| Anastrepha ludens | 1 |
| Anastrepha suspensa | 2 |
| Anathix ralla | 3 |
| Anaticola crassicornis | 1 |
| Anatoecus sp. UT01 | 1 |
| Ancaudellia kheili | 1 |
| Ancaudellia marshallae | 1 |
| Ancaudellia shawi | 1 |
| Anchitrichia spangleri | 2 |
| Anchomanes difformis | 2 |
| Anchusa officinalis | 1 |
| Ancistrochilus rothschildianus | 2 |
| Ancistrocladus korupensis | 5 |
| Ancistrona vagelli | 1 |
| Ancylobacter aquaticus | 1 |
| Ancylostoma caninum | 10 |
| Ancylostoma ceylanicum | 4 |
| Ancylostoma duodenale | 1 |
| Andean potato latent virus | 1 |
| Andean potato mottle virus | 1 |
| Andersonia sprengelioides | 2 |
| Andes virus | 1 |
| Andira inermis | 2 |
| Andreaea nitida | 2 |
| Andreaea rothii | 5 |
| Andreaea rupestris | 1 |
| Andreaeobryum macrosporum | 3 |
| Androctonus australis | 5 |
| Androctonus mauretanicus | 1 |
| Androcymbium ciliolatum | 4 |
| Andrographis paniculata | 2 |
| Andromeda polifolia | 2 |
| Andropadus latirostris | 1 |
| Androsace erecta | 2 |
| Androsace lactea | 3 |
| Androsace septentrionalis | 2 |
| Androsace sp. Anderberg s.n. | 5 |
| Androsace spinulifera | 5 |
| Androstachys johnsonii | 5 |
| Androstephium coeruleum | 2 |
| Androya decaryi | 3 |
| Anechura bipunctata | 1 |
| Aneilema calceolus | 2 |
| Aneilema clarkei | 2 |
| Aneilema neocaledonicum | 2 |
| Anemarrhena asphodeloides | 5 |
| Anemia mexicana | 2 |
| Anemia phyllitidis | 5 |
| Anemone antucensis | 1 |
| Anemone blanda | 1 |
| Anemone canadensis | 1 |
| Anemone hortensis | 1 |
| Anemone hupehensis | 1 |
| Anemone multifida | 1 |
| Anemone nemorosa | 1 |
| Anemone nemorosa x Anemone ranunculoides | 1 |
| Anemone palmata | 1 |
| Anemone ranunculoides | 1 |
| Anemone virginiana | 1 |
| Anemonia erythraea | 2 |
| Anemonia majano | 1 |
| Anemonia sulcata | 6 |
| Anemopsis californica | 5 |
| Anetium citrifolium | 2 |
| Aneurinibacillus thermoaerophilus | 4 |
| Angelica dahurica | 2 |
| Angelica lucida | 2 |
| Angelonia pubescens | 3 |
| Anginon rugosum | 2 |
| Angiopteris evecta | 2 |
| Angiopteris lygodiifolia | 5 |
| Angiostrongylus cantonensis | 1 |
| Angophora hispida | 2 |
| Angraecum sesquipedale | 2 |
| Anguilla anguilla | 12 |
| Anguilla bicolor | 1 |
| Anguilla celebesensis | 1 |
| Anguilla japonica | 28 |
| Anguilla marmorata | 1 |
| Anguilla rostrata | 2 |
| Angylocalyx braunii | 2 |
| Anhinga novaehollandiae | 1 |
| Anicla infecta | 1 |
| Anigozanthos flavidus | 6 |
| Anigozanthos manglesii | 2 |
| Anisakis simplex | 6 |
| Aniseia argentina | 5 |
| Aniseia cernua | 5 |
| Aniseia martinicensis | 5 |
| Anisocarpus scabridus | 1 |
| Anisolabis maritima | 1 |
| Anisophyllea corneri | 2 |
| Anisophyllea disticha | 2 |
| Anisophyllea fallax | 2 |
| Anisoptera marginata | 2 |
| Anisopteromalus calandrae | 1 |
| Ankistrodesmus stipitatus | 1 |
| Anneslea fragrans | 2 |
| Annona cherimola | 1 |
| Annona cherimola x Annona squamosa | 2 |
| Annona muricata | 5 |
| Anodopetalum biglandulosum | 2 |
| Anogramma guatemalensis | 1 |
| Anogramma lorentzii | 2 |
| Anolis carolinensis | 3 |
| Anolis pulchellus | 3 |
| Anomala cuprea | 1 |
| Anomala octiescostata | 1 |
| Anomala osakana | 1 |
| Anomalurus sp. | 2 |
| Anomatheca laxa | 3 |
| Anomobryum conicum | 1 |
| Anomobryum julaceum | 3 |
| Anomochloa marantoidea | 4 |
| Anomodon abbreviatus | 2 |
| Anomodon giraldii | 2 |
| Anomodon minor | 2 |
| Anomodon rugelii | 3 |
| Anopheles aconitus | 1 |
| Anopheles albimanus | 6 |
| Anopheles albitarsis | 1 |
| Anopheles amictus | 1 |
| Anopheles annularis | 1 |
| Anopheles annulipes A | 1 |
| Anopheles annulipes B | 1 |
| Anopheles annulipes D | 1 |
| Anopheles aquasalis | 1 |
| Anopheles arabiensis | 2 |
| Anopheles balabacensis | 1 |
| Anopheles bancroftii | 1 |
| Anopheles bellator | 1 |
| Anopheles coustani | 1 |
| Anopheles cruzii | 1 |
| Anopheles darlingi | 2 |
| Anopheles dirus | 2 |
| Anopheles farauti | 1 |
| Anopheles filipinae | 1 |
| Anopheles flavirostris | 1 |
| Anopheles gambiae | 785 |
| Anopheles hilli | 1 |
| Anopheles intermedius | 1 |
| Anopheles karwari | 1 |
| Anopheles kochi | 1 |
| Anopheles kompi | 1 |
| Anopheles litoralis | 1 |
| Anopheles lungae | 1 |
| Anopheles maculatus | 1 |
| Anopheles mangyanus | 1 |
| Anopheles mattogrossensis | 1 |
| Anopheles melas | 2 |
| Anopheles meraukensis | 1 |
| Anopheles merus | 4 |
| Anopheles minimus | 2 |
| Anopheles neivai | 1 |
| Anopheles novaguinensis | 1 |
| Anopheles pseudopunctipennis | 1 |
| Anopheles pseudowillmori | 1 |
| Anopheles punctulatus | 1 |
| Anopheles quadriannulatus | 2 |
| Anopheles quadrimaculatus | 2 |
| Anopheles sinensis | 1 |
| Anopheles solomonis | 1 |
| Anopheles sp. | 1 |
| Anopheles sp. near punctulatus | 1 |
| Anopheles stephensi | 11 |
| Anopheles subpictus | 1 |
| Anopheles tessellatus | 1 |
| Anopheles varuna | 1 |
| Anopterus macleayanus | 2 |
| Anorthodes tarda | 1 |
| Ansellia gigantea | 2 |
| Anseranas semipalmata | 2 |
| Anser anser | 12 |
| Anser indicus | 1 |
| Anser sp. | 1 |
| Antarctic bacterium DS2-3R | 1 |
| Antarctic bacterium TAB5 | 1 |
| Antechinus stuartii | 2 |
| Antedon bifida | 1 |
| Anthalia sp. NCSU-99071950 | 2 |
| Antheraea mylitta | 1 |
| Antheraea paphia | 1 |
| Antheraea pernyi | 12 |
| Antheraea pernyi nucleopolyhedrovirus | 3 |
| Antheraea polyphemus | 4 |
| Antheraea yamamai | 1 |
| Anthericopsis sepalosa | 2 |
| Anthericum liliago | 5 |
| Antherina suraka | 3 |
| Anthobothrium laciniatum | 1 |
| Anthocercis viscosa | 2 |
| Anthoceros formosae | 6 |
| Anthoceros punctatus | 3 |
| Anthocidaris crassispina | 11 |
| Anthocleista grandiflora | 2 |
| Anthogonium gracile | 2 |
| Anthonomus grandis | 4 |
| Anthopleura aff. xanthogrammica | 1 |
| Anthopleura elegantissima | 4 |
| Anthopleura fuscoviridis | 1 |
| Anthopleura japonica | 2 |
| Anthopleura xanthogrammica | 1 |
| Anthospermum herbaceum | 2 |
| Anthotium rubriflorum | 2 |
| Anthoxanthum odoratum | 1 |
| Anthriscus aemula | 2 |
| Anthurium scherzerianum | 2 |
| Antidaphne viscoidea | 2 |
| Antigonia capros | 1 |
| Antillotolania sp. | 1 |
| Antilocapra americana | 3 |
| Antirhea lucida | 2 |
| Antirrhinum coulterianum | 1 |
| Antirrhinum graniticum | 1 |
| Antirrhinum hispanicum | 1 |
| Antirrhinum majus | 24 |
| Antirrhinum majus x Antirrhinum hispanicum | 1 |
| Antirrhinum meonanthum | 1 |
| Antirrhinum mollissimum | 1 |
| Antirrhinum multiflorum | 1 |
| Antirrhinum ovatum | 3 |
| Antirrhinum subcordatum | 3 |
| Antithamnion aglandum | 1 |
| Antithamnion callocladum | 1 |
| Antithamnionella sp. | 1 |
| Antithamnion kylinii | 1 |
| Antithamnion nipponicum | 1 |
| Antithamnion sp. | 19 |
| Antithamnion sparsum | 1 |
| Antitrichia formosana | 2 |
| Antonia ovata | 2 |
| Antrophyum boryanum | 2 |
| Antrophyum ensiforme | 2 |
| Antrophyum plantagineum | 2 |
| Antrophyum reticulatum | 2 |
| Antrozous pallidus | 2 |
| Anurida maritima | 1 |
| Aoranthe penduliflora | 2 |
| Aotus azarai | 3 |
| Aotus lemurinus | 6 |
| Aotus nancymaae | 8 |
| Aotus nigriceps | 1 |
| Aotus trivirgatus | 11 |
| Aotus vociferans | 4 |
| Apacheria chiricahuensis | 1 |
| Apalanthe granatensis | 2 |
| Apalocnemis sp. NCSU-95051121 | 2 |
| Apalocnemis sp. NCSU-95051123 | 2 |
| Apedinella radians | 2 |
| Apeiba tibourbou | 5 |
| Aphananthe aspera | 2 |
| Aphananthe monoica | 2 |
| Aphanarthrum sp. SCR03 | 1 |
| Aphanastoma virescens | 1 |
| Aphandra natalia | 5 |
| Aphanizomenon flos-aquae | 2 |
| Aphanizomenon ovalisporum | 6 |
| Aphanizomenon sp. KAC15 | 1 |
| Aphanizomenon sp. TR183 | 3 |
| Aphanocladium album | 2 |
| Aphanomyces astaci | 2 |
| Aphanopetalum resinosum | 5 |
| Aphanorrhegma serratum | 1 |
| Aphanothece halophytica | 2 |
| Aphanothece sacrum | 1 |
| Aphis gossypii | 6 |
| Aphloia theiformis | 2 |
| Aphonopelma chalcodes | 2 |
| Aphonopelma sp. | 2 |
| Aphrodite aculeata | 1 |
| Aphyllanthes monspeliensis | 2 |
| Apinagia yguazuensis | 2 |
| Apios taiwaniana | 2 |
| Apis cerana | 2 |
| Apis dorsata | 1 |
| Apis mellifera | 30 |
| Apium graveolens | 17 |
| Aplectrum hyemale | 2 |
| Aplodontia rufa | 2 |
| Aplodon wormskioldii | 1 |
| Aplomya theclarum | 1 |
| Aplysia californica | 52 |
| Aplysia cf. juliana | 1 |
| Aplysia juliana | 1 |
| Aplysia kurodai | 5 |
| Aplysia limacina | 1 |
| Aplysia sp. | 1 |
| Apocynum androsaemifolium | 1 |
| Apocynum cannabinum | 2 |
| Apodemia mormo | 5 |
| Apodemus agrarius | 3 |
| Apodemus alpicola | 1 |
| Apodemus argenteus | 1 |
| Apodemus draco | 1 |
| Apodemus flavicollis | 1 |
| Apodemus gurkha | 1 |
| Apodemus mystacinus | 1 |
| Apodemus peninsulae | 1 |
| Apodemus semotus | 1 |
| Apodemus speciosus | 1 |
| Apodemus sylvaticus | 4 |
| Apodolirion lanceolatum | 1 |
| Apodytes dimidiata | 3 |
| Apoglosssum ruscifolium | 2 |
| Apoi virus | 3 |
| Aponogeton crispus | 3 |
| Aponogeton distachyus | 2 |
| Aponogeton elongatus | 2 |
| Apophysomyces elegans | 2 |
| Aporia crataegi | 1 |
| Aporusa frutescens | 2 |
| Apostasia stylidioides | 4 |
| Appunia guatemalensis | 2 |
| Apricot latent ringspot virus | 1 |
| Apriona germari | 5 |
| Apsilocephala sp. | 2 |
| Aptenodytes forsteri | 1 |
| Aptenodytes patagonicus | 2 |
| Apterobittacus apterus | 6 |
| Apteronotus leptorhynchus | 2 |
| Apteropanorpa evansi | 3 |
| Apteryx australis | 3 |
| Apteryx haastii | 1 |
| Aptosimum sp. DePamphilis HWBG | 2 |
| Aptosimum sp. KES PCR3 | 1 |
| Aptychella glomeratopropagulifera | 2 |
| Apuleia leiocarpa | 2 |
| Apurimacia boliviana | 2 |
| Apus affinis | 2 |
| Apus apus | 2 |
| Aquaspirillum arcticum | 2 |
| Aquaspirillum itersonii | 3 |
| Aquaspirillum serpens | 2 |
| Aquifex aeolicus | 394 |
| Aquifex pyrophilus | 43 |
| Aquila chrysaetos | 1 |
| Aquilaria beccariana | 5 |
| Aquilegia vulgaris | 2 |
| Ara ararauna | 2 |
| Arabella iricolor | 1 |
| Arabidopsis arenosa | 4 |
| Arabidopsis halleri | 3 |
| Arabidopsis korshinskyi | 4 |
| Arabidopsis lyrata | 16 |
| Arabidopsis suecica | 6 |
| Arabidopsis thaliana | 803 |
| Arabis alpina | 5 |
| Arabis blepharophylla | 5 |
| Arabis drummondii | 6 |
| Arabis fecunda | 2 |
| Arabis fendleri | 3 |
| Arabis flagellosa | 2 |
| Arabis gemmifera | 8 |
| Arabis glabra | 7 |
| Arabis gunnisoniana | 2 |
| Arabis hirsuta | 3 |
| Arabis holboellii | 2 |
| Arabis jacquinii | 3 |
| Arabis lemmonii | 2 |
| Arabis lignifera | 5 |
| Arabis lyallii | 4 |
| Arabis microphylla | 2 |
| Arabis mosaic virus | 1 |
| Arabis parishii | 4 |
| Arabis pauciflora | 3 |
| Arabis procurrens | 3 |
| Arabis stelleri | 4 |
| Arabis turrita | 3 |
| Aracatuba virus | 1 |
| Arachis hypogaea | 21 |
| Arachis simpsonii | 1 |
| Arachniodes aristata | 2 |
| Aragoa abietina | 2 |
| Aragoa cleefii | 2 |
| Aragoa cupressina | 2 |
| Aralia cordata | 3 |
| Aralia spinosa | 3 |
| Aralidium pinnatifidum | 3 |
| Araneus ventricosus | 1 |
| Araptus sp. SCH05 | 3 |
| Aratinga mitrata | 1 |
| Aratitiyopea lopezii | 2 |
| Araucaria angustifolia | 2 |
| Araucaria araucana | 4 |
| Araucaria bernieri | 2 |
| Araucaria bidwillii | 2 |
| Araucaria cunninghamii | 2 |
| Araucaria heterophylla | 5 |
| Araucaria hunsteinii | 2 |
| Araucaria meulleri | 2 |
| Araucaria montana | 2 |
| Araucaria muelleri | 2 |
| Araucaria rulei | 2 |
| Araucarius minor | 2 |
| Arbacia lixula | 2 |
| Arbacia punctulata | 3 |
| Arborophila torqueola | 1 |
| Arbutus canariensis | 2 |
| Arbutus menziesii | 1 |
| Arbutus unedo | 3 |
| Arcanobacterium pyogenes | 8 |
| Arceuthobium verticilliflorum | 2 |
| Archaeoattacus edwardsii | 3 |
| Archaeoglobus fulgidus | 460 |
| Archaeoglobus lithotrophicus | 2 |
| Archaeoglobus profundus | 5 |
| Archaeoglobus veneficus | 3 |
| Archaeopotamobius sibiriensis | 1 |
| Archakebia apetala | 2 |
| Archaster typicus | 1 |
| Archegozetes longisetosus | 1 |
| Archeria comberi | 2 |
| Archidium alternifolium | 2 |
| Archidium donnelli | 1 |
| Archidium stellatum | 2 |
| Archidium tenerrimum | 1 |
| Archimandrita tessellata | 1 |
| Archips argyrospila | 1 |
| Archisotoma sp. | 1 |
| Archolipeurus nandu | 1 |
| Archontophoenix purpurea | 2 |
| Arctic ground squirrel hepatitis B virus | 1 |
| Arctium lappa | 1 |
| Arctoa falcata | 4 |
| Arctoa fulvella | 3 |
| Arctocephalus forsteri | 1 |
| Arctocephalus galapagoensis | 1 |
| Arctopsyche grandis | 2 |
| Arctoscopus japonicus | 1 |
| Arctostaphylos manzanita | 1 |
| Arctostaphylos uva-ursi | 4 |
| Arcytophyllum aristatum | 2 |
| Ardeicola ardeae | 1 |
| Ardisia crenata | 3 |
| Ardisiandra wettsteinii | 5 |
| Areca triandra | 2 |
| Areca vestiaria | 2 |
| Arenaria interpres | 1 |
| Arenga hookeriana | 2 |
| Arenga pinnata | 5 |
| Arenga undulatifolia | 2 |
| Arenicola marina | 1 |
| Areschougia congesta | 2 |
| Areschougia ligulata | 2 |
| Aretaon asperrimus | 1 |
| Arethusa bulbosa | 2 |
| Argania spinosa | 4 |
| Argema mimosae | 3 |
| Argemone mexicana | 7 |
| Argia violacea | 1 |
| Argopecten irradians | 22 |
| Argophyllum sp. Telford 5462 | 6 |
| Argostemma hookeri | 2 |
| Argusianus argus | 1 |
| Argyreia nervosa | 5 |
| Argyreia osyrensis | 3 |
| Argyreia splendens | 2 |
| Argyrocytisus battandieri | 2 |
| Argyrolobium harveyanum | 2 |
| Argyrolobium marginatum | 2 |
| Argyrolobium uniflorum | 4 |
| Argyrolobium zanonii | 3 |
| Argyrotaenia citrana | 1 |
| Argyrotaenia velutinana | 1 |
| Argyroxiphium caliginis | 1 |
| Argyroxiphium sandwicense | 1 |
| Arhodomonas aquaeolei | 2 |
| Arianta arbustorum | 1 |
| Ariopsis peltata | 2 |
| Arisaema tortuosum | 2 |
| Arisaema triphyllum | 5 |
| Aristea capitata | 1 |
| Aristea glauca | 5 |
| Aristichthys nobilis | 1 |
| Aristida congesta | 3 |
| Aristolochia elegans | 3 |
| Aristolochia macrophylla | 3 |
| Aristolochia tomentosa | 3 |
| Aristotelia chilensis | 3 |
| Aristotelia serrata | 2 |
| Arixyleborus cf. granifer BHJ-2002 | 1 |
| Arixyleborus cf. sus BHJ-2002 | 1 |
| Armadillidium vulgare | 5 |
| Armeria bottendorfensis | 2 |
| Armeria splendens | 2 |
| Armigeres subalbatus | 3 |
| Armoracia rusticana | 6 |
| Arnhemia cryptantha | 1 |
| Arpophyllum giganteum | 2 |
| Arrabidaea pubescens | 2 |
| Arracacia aegopodioides | 3 |
| Artace cribraria | 2 |
| Artamus leucorhynchus | 2 |
| Artemia franciscana | 24 |
| Artemia salina | 11 |
| Artemia sp. | 2 |
| Artemisia annua | 11 |
| Artemisia vulgaris | 1 |
| Arthrobacter aurescens | 6 |
| Arthrobacter citreus | 2 |
| Arthrobacter globiformis | 12 |
| Arthrobacter histidinolovorans | 1 |
| Arthrobacter keyseri | 12 |
| Arthrobacter nicotianae | 1 |
| Arthrobacter nicotinovorans | 12 |
| Arthrobacter oxydans | 2 |
| Arthrobacter pascens | 1 |
| Arthrobacter photogonimos | 1 |
| Arthrobacter polychromogenes | 1 |
| Arthrobacter protophormiae | 1 |
| Arthrobacter sp. | 17 |
| Arthrobacter sp. 1C | 2 |
| Arthrobacter sp. B7 | 3 |
| Arthrobacter sp. C2-2 | 4 |
| Arthrobacter sp. FHP1 | 2 |
| Arthrobacter sp. K-1 | 1 |
| Arthrobacter sp. KM | 1 |
| Arthrobacter sp. KUJ8602 | 1 |
| Arthrobacter sp. NRRL B3728 | 1 |
| Arthrobacter sp. P1 | 2 |
| Arthrobacter sp. Q36 | 2 |
| Arthrobacter sp. RC100 | 1 |
| Arthrobacter sp. 'SMCC G915' | 1 |
| Arthrobacter sp. 'SMCC G950' | 1 |
| Arthrobacter sp. 'SMCC G954' | 1 |
| Arthrobacter sp. 'SMCC G959' | 1 |
| Arthrobacter sp. 'SMCC G960' | 1 |
| Arthrobacter sp. 'SMCC G961' | 1 |
| Arthrobacter sp. 'SMCC G962' | 1 |
| Arthrobacter sp. 'SMCC G963' | 1 |
| Arthrobacter sp. 'SMCC G964' | 2 |
| Arthrobacter sp. 'SMCC G965' | 2 |
| Arthrobacter sp. 'SMCC G966' | 1 |
| Arthrobacter sp. 'SMCC G968' | 1 |
| Arthrobacter sp. 'SMCC G969' | 1 |
| Arthrobacter sp. 'SMCC G970' | 1 |
| Arthrobacter sp. 'SMCC G979' | 1 |
| Arthrobacter sp. 'SMCC G980' | 1 |
| Arthrobacter sp. 'SMCC G982' | 1 |
| Arthrobacter sp. 'SMCC G984' | 1 |
| Arthrobacter sp. 'SMCC G986' | 1 |
| Arthrobacter sp. 'SMCC G991' | 2 |
| Arthrobacter sp. 'SMCC G993' | 1 |
| Arthrobacter sp. 'SMCC ZAT001' | 1 |
| Arthrobacter sp. 'SMCC ZAT004' | 1 |
| Arthrobacter sp. 'SMCC ZAT005' | 1 |
| Arthrobacter sp. 'SMCC ZAT012' | 1 |
| Arthrobacter sp. 'SMCC ZAT013' | 2 |
| Arthrobacter sp. 'SMCC ZAT014' | 1 |
| Arthrobacter sp. 'SMCC ZAT054' | 1 |
| Arthrobacter sp. 'SMCC ZAT055' | 1 |
| Arthrobacter sp. 'SMCC ZAT056' | 1 |
| Arthrobacter sp. 'SMCC ZAT255' | 1 |
| Arthrobacter sp. 'SMCC ZAT262' | 1 |
| Arthrobacter sp. 'SMCC ZAT263' | 1 |
| Arthrobacter sp. TM1 | 1 |
| Arthrobacter sp. YCWD3 | 1 |
| Arthrobacter uratoxydans | 1 |
| Arthrobacter ureafaciens | 1 |
| Arthrobotrys dactyloides | 1 |
| Arthrobotrys oligospora | 2 |
| Arthrocormus schimperi | 3 |
| Arthroderma benhamiae | 3 |
| 'Arthromyces ramosus' | 3 |
| Arthrophyllum pinnatum | 2 |
| Arthropodium cirrhatum | 2 |
| Arthropteris backleri | 2 |
| Arthrospira maxima | 1 |
| Arthrospira platensis | 3 |
| Arthrospira sp. BU1 | 1 |
| Arthrospira sp. Dihe | 1 |
| Arthrospira sp. E2 | 1 |
| Arthrospira sp. M1 | 1 |
| Arthrospira sp. Paracas 98 | 1 |
| Arthrospira sp. Paracas E2 | 1 |
| Arthrospira sp. Paracas P2 | 1 |
| Arthrospira sp. PK | 1 |
| Arthrospira sp. Sark | 1 |
| Arthrostemma ciliatum | 2 |
| Artibeus jamaicensis | 5 |
| Artichoke italian latent virus | 1 |
| Artichoke mottled crinkle virus | 1 |
| Artocarpus heterophyllus | 1 |
| Artocarpus integer | 1 |
| Arum italicum | 1 |
| Arum maculatum | 2 |
| Aruncus dioicus | 3 |
| Arundina graminifolia | 2 |
| Arundo donax | 4 |
| Arvicanthis ansorgei | 1 |
| Arxula adeninivorans | 11 |
| Asarum canadense | 6 |
| Asarum europaeum | 1 |
| Asbestopluma hypogea | 2 |
| Ascalaphus macaronius | 1 |
| Ascarina lucida | 2 |
| Ascarina sp. Qiu-M149 | 4 |
| Ascaris lumbricoides | 3 |
| Ascaris suum | 37 |
| Ascidia sydneiensis | 2 |
| Asclepias curassavica | 2 |
| Asclepias exaltata | 2 |
| Asclepias syriaca | 1 |
| Ascobolus immersus | 2 |
| Ascocalyx abietina | 1 |
| Ascochyta pisi | 1 |
| Ascolepis capensis | 2 |
| Ascophyllum nodosum | 6 |
| Ascoseirophila violodora | 2 |
| Ascovirus DpAV4 | 3 |
| Asellus aquaticus | 1 |
| Asimina triloba | 5 |
| Asio flammeus | 1 |
| Asota caricae | 1 |
| Aspalathus cephalotes | 2 |
| Asparagus cochinchinensis | 2 |
| Asparagus officinalis | 21 |
| Asparagus scaber | 1 |
| Aspergillus aculeatus | 9 |
| Aspergillus awamori | 15 |
| Aspergillus bombycis | 1 |
| Aspergillus candidus | 1 |
| Aspergillus clavatus | 1 |
| Aspergillus ficuum | 3 |
| Aspergillus flavus | 11 |
| Aspergillus foetidus | 1 |
| Aspergillus fumigatus | 81 |
| Aspergillus giganteus | 2 |
| Aspergillus japonicus | 1 |
| Aspergillus kawachii | 9 |
| Aspergillus leporis | 1 |
| Aspergillus niger | 84 |
| Aspergillus nomius | 1 |
| Aspergillus ochraceoroseus | 1 |
| Aspergillus ochraceus | 1 |
| Aspergillus oryzae | 56 |
| Aspergillus pallidus | 1 |
| Aspergillus parasiticus | 18 |
| Aspergillus phoenicis | 3 |
| Aspergillus pseudotamarii | 1 |
| Aspergillus restrictus | 1 |
| Aspergillus saitoi | 9 |
| Aspergillus shirousami | 2 |
| Aspergillus sojae | 1 |
| Aspergillus terreus | 22 |
| Aspergillus tubingensis | 2 |
| Asperococcus fistulosus | 2 |
| Asperula laevigata | 2 |
| Asphodeline lutea | 2 |
| Asphodelus aestivus | 2 |
| Aspicarpa brevipes | 2 |
| Aspicarpa hirtella | 2 |
| Aspicarpa pulchella | 2 |
| Aspidelaps scutatus | 2 |
| Aspidistra elatior | 5 |
| Aspidopterys elliptica | 2 |
| Aspidoscelis uniparens | 2 |
| Asplenium adiantum-nigrum | 2 |
| Asplenium aethiopicum | 2 |
| Asplenium antiquum | 2 |
| Asplenium aureum | 2 |
| Asplenium australasicum | 2 |
| Asplenium bourgaei | 2 |
| Asplenium bulbiferum | 2 |
| Asplenium cardiophyllum | 2 |
| Asplenium ceterach | 2 |
| Asplenium cordatum | 2 |
| Asplenium cristatum | 1 |
| Asplenium dalhousiae | 2 |
| Asplenium ensiforme | 2 |
| Asplenium filipes | 2 |
| Asplenium fontanum | 2 |
| Asplenium griffithianum | 2 |
| Asplenium hemionitis | 2 |
| Asplenium hispanicum | 2 |
| Asplenium hondoense | 2 |
| Asplenium hybridum | 2 |
| Asplenium incisum | 2 |
| Asplenium jahandiezii | 2 |
| Asplenium laetum | 2 |
| Asplenium majoricum | 2 |
| Asplenium marinum | 2 |
| Asplenium nidus | 3 |
| Asplenium normale | 3 |
| Asplenium oligophlebium | 2 |
| Asplenium parvifolium | 2 |
| Asplenium prolongatum | 2 |
| Asplenium riparium | 2 |
| Asplenium ritoense | 2 |
| Asplenium ruprechtii | 2 |
| Asplenium sagittatum | 2 |
| Asplenium sarelii | 2 |
| Asplenium scolopendrium | 2 |
| Asplenium septentrionale | 2 |
| Asplenium serratum | 2 |
| Asplenium setoi | 2 |
| Asplenium theciferum | 2 |
| Asplenium trichomanes | 2 |
| Asplenium viride | 2 |
| Asplenium wilfordii | 2 |
| Asplenium wrightii | 2 |
| Astacus astacus | 6 |
| Astatoreochromis alluaudi | 1 |
| Astatotilapia brownae | 1 |
| Astatotilapia burtoni | 4 |
| Astelia banksii | 2 |
| Astelia linearis | 2 |
| Astelia pumila | 2 |
| Asteranthos brasiliensis | 2 |
| Asterella tenella | 2 |
| Asterias amurensis | 5 |
| Asterias forbesii | 1 |
| Asterias rubens | 5 |
| Asterina pectinifera | 20 |
| Asterocladon lobatum | 2 |
| Asterogyne martiana | 3 |
| Asteronema ferruginea | 2 |
| Asteronema rhodochortonoides | 2 |
| Asteropeia micraster | 5 |
| Asteropyrum cavaleriei | 4 |
| Aster yellows phytoplasma | 15 |
| Asthenes cactorum | 1 |
| Astilbe taquetii | 5 |
| Astilboides tabularis | 2 |
| Astragalus bisulcatus | 1 |
| Astragalus falcatus | 1 |
| Astragalus glycyphyllos | 1 |
| Astragalus membranaceus | 1 |
| Astragalus sinicus | 5 |
| Astragalus sparsus | 2 |
| Astrantia major | 2 |
| Astrephomene gubernaculifera | 3 |
| Astrephomene perforata | 3 |
| Astripomoea grantii | 5 |
| Astripomoea malvacea | 5 |
| Astrobunus grallator | 2 |
| Astrocaryum alatum | 2 |
| Astroloba foliosa | 2 |
| Astroloma humifusum | 2 |
| Astronia macrophylla | 2 |
| Astronia smilacifolia | 2 |
| Astropecten brasiliensis | 1 |
| Astrotia stokesi | 1 |
| Astyanax fasciatus | 2 |
| Astyanax mexicanus | 4 |
| Ataenogera abdominalis | 2 |
| Atalantia ceylanica | 5 |
| Atalophlebia sp. | 1 |
| Ateleia herbert-smithii | 2 |
| Ateleopus japonicus | 1 |
| Atelerix algirus | 1 |
| Ateles belzebuth | 5 |
| Ateles fusciceps | 5 |
| Ateles geoffroyi | 7 |
| Ateles paniscus | 2 |
| Ateles sp. | 2 |
| Ateles sp. haplotype Abh10 | 1 |
| Ateles sp. haplotype Abh11 | 1 |
| Ateles sp. haplotype Abh19 | 1 |
| Ateles sp. haplotype Afr19 | 1 |
| Ateles sp. haplotype Afr20 | 1 |
| Ateles sp. haplotype Afr21 | 1 |
| Ateles sp. haplotype Afr27 | 1 |
| Ateles sp. haplotype Agp13 | 1 |
| Atelestus pulicarius | 2 |
| Ateline herpesvirus 2 | 1 |
| Ateline herpesvirus 3 | 10 |
| Atelocynus microtis | 1 |
| Athelia rolfsii | 3 |
| Atherosperma moschatum | 5 |
| Atherurus macrourus | 1 |
| Atheta vestita | 1 |
| Athrotaxis laxifolia | 2 |
| Athyrium distentifolium | 2 |
| Athyrium filix-femina | 3 |
| Athyrium niponicum | 2 |
| Athyrium sheareri | 2 |
| Athyrium yokoscense | 2 |
| Atlantic cod nervous necrosis virus | 2 |
| Atlantic halibut nodavirus | 1 |
| Atopsyche sp. UMSP000029352-Venezuela | 3 |
| Atractaspis microlepidota | 3 |
| Atractomorpha lata | 1 |
| Atrax robustus | 1 |
| Atrichum altecristatum | 3 |
| Atrichum angustatum | 3 |
| Atriplex centralasiatica | 1 |
| Atriplex hortensis | 5 |
| Atriplex lentiformis | 3 |
| Atriplex nummularia | 5 |
| Atriplex patula | 2 |
| Atriplex prostrata | 2 |
| Atriplex rosea | 2 |
| Atropa belladonna | 33 |
| Atrophaneura alcinous | 2 |
| Atropoides nummifer | 3 |
| Attacus atlas | 3 |
| Attacus caesar | 2 |
| Attacus lorquinii | 1 |
| Attalea allenii | 2 |
| Atuna racemosa | 2 |
| Atylosia lineata | 2 |
| Aubrieta deltoidea | 3 |
| Aucuba japonica | 6 |
| Audouinella arcuata | 2 |
| Audouinella hermannii | 2 |
| Augea capensis | 2 |
| Augochlorella pomoniella | 2 |
| Aulacomnium androgynum | 1 |
| Aulacomnium turgidum | 3 |
| Aulacopilum hodgkinsoniae | 4 |
| Aulonocara hansbaenschi | 2 |
| Aulopus japonicus | 1 |
| Aura virus | 1 |
| Aureobasidium pullulans | 7 |
| Aureococcus anophagefferens | 4 |
| Aureoumbra lagunensis | 2 |
| Australopyrum retrofractum | 3 |
| Australopyrum velutinum | 3 |
| Australothis rubrescens | 1 |
| Austrelaps superbus | 1 |
| Austrobaileya scandens | 6 |
| Austrocochlea porcata | 1 |
| Austrofilum incommodum | 2 |
| Austrogramme decipiens | 1 |
| Austrolycichthys brachycephalus | 1 |
| Austromenopon echinatum | 1 |
| Austromenopon merguli | 1 |
| Austromuellera trinervia | 3 |
| Austrophilopterus pacificus | 1 |
| Austrophilopterus sp. Rabre | 1 |
| Austrophilopterus sp. Segou | 1 |
| Austrophilopterus subsimilis | 1 |
| Austrophilopterus torquatus | 1 |
| Austrophorocera sp. JOS-2001 | 1 |
| Austrosimulium bancrofti | 4 |
| Austrosimulium mirabile | 2 |
| Austrosteenisia blackii | 2 |
| Austrotaxus spicata | 2 |
| Austrotinodes sp. UMSP000029359-Costa Rica | 2 |
| Autographa californica nucleopolyhedrovirus | 16 |
| Automate gardineri | 2 |
| Auxarthron zuffianum | 1 |
| Auxenochlorella protothecoides | 2 |
| Avena agadiriana | 1 |
| Avena clauda | 1 |
| Avena fatua | 7 |
| Avena maroccana | 1 |
| Avena nuda | 1 |
| Avena sativa | 81 |
| Avena sterilis | 2 |
| Avena strigosa | 3 |
| Avena vaviloviana | 1 |
| Averrhoa carambola | 6 |
| Avian carcinoma virus | 2 |
| Avian encephalomyelitis virus | 2 |
| Avian endogenous retrovirus EAV-HP | 4 |
| Avian endogenous virus ev-1 | 1 |
| Avian erythroblastosis virus | 4 |
| Avian infectious bronchitis virus | 1 |
| Avian influenza virus | 2 |
| Avian leukemia virus | 2 |
| Avian leukosis virus | 9 |
| Avian musculoaponeurotic fibrosarcoma virus | 2 |
| Avian myeloblastosis-associated virus | 4 |
| Avian myeloblastosis virus | 5 |
| Avian myelocytomatosis virus | 6 |
| Avian orthoreovirus | 2 |
| Avian paramyxovirus 2 | 2 |
| Avian paramyxovirus 4 | 1 |
| Avian paramyxovirus 6 | 2 |
| Avian pneumovirus | 1 |
| Avian retrovirus | 4 |
| Avian rotavirus A | 5 |
| Avian sarcoma virus | 10 |
| Avicennia alba | 2 |
| Avicennia bicolor | 2 |
| Avicennia germinans | 2 |
| Avicennia marina | 15 |
| Axinella corrugata | 1 |
| Axiothella rubrocincta | 1 |
| Axis porcinus | 1 |
| Aythya americana | 2 |
| Azadirachta indica | 2 |
| Azara celastrina | 2 |
| Azima tetracantha | 2 |
| Azoarcus evansii | 19 |
| Azoarcus sp. | 1 |
| Azoarcus sp. BH72 | 6 |
| Azoarcus sp. EB1 | 1 |
| Azoarcus sp. T | 2 |
| Azoarcus tolulyticus | 1 |
| Azoarcus toluvorans | 1 |
| Azolla caroliniana | 2 |
| Azorhizobium caulinodans | 17 |
| Azorhizobium sp. UPM1161 | 1 |
| Azorhizophilus paspali | 3 |
| Azospirillum brasilense | 63 |
| Azospirillum doebereinerae | 1 |
| Azospirillum halopraeferens | 1 |
| Azospirillum irakense | 6 |
| Azospirillum largimobile | 1 |
| Azospirillum lipoferum | 2 |
| Azospirillum sp. A1-3 | 1 |
| Azospirillum sp. MI13 | 1 |
| Azotobacter beijerinckii | 1 |
| Azotobacter chroococcum | 17 |
| Azotobacter salinestris | 1 |
| Azotobacter sp. FA8 | 2 |
| Azotobacter vinelandii | 528 |