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List of superfamilies in Bifidobacterium longum
Click on the superfamily code to get information about Bifidobacterium longum 
in the respective superfamily.



SCOP Superfamily
code
    No of
sequences
    Superfamily name
46458
        1  Globin-like
46548
        1  alpha-helical ferredoxin
46557
        1  GreA transcript cleavage protein, N-terminal domain
46561
        1  Ribosomal protein L29 (L29p)
46565
        2  Chaperone J-domain
46579
        1  Prefoldin
46589
        2  tRNA-binding arm
46600
        2  C-terminal UvrC-binding domain of UvrB
46626
        1  Cytochrome c
46689
        14  Homeodomain-like
46767
        1  Methylated DNA-protein cysteine methyltransferase, C-terminal domain
46785
        4  "Winged helix" DNA-binding domain
46894
        12  C-terminal effector domain of the bipartite response regulators
46906
        1  Ribosomal protein L11, C-terminal domain
46911
        1  Ribosomal protein S18
46915
        2  Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
46929
        1  DNA helicase RuvA subunit, C-terminal domain
46934
        1  UBA-like
46946
        1  S13-like H2TH domain
46955
        6  Putative DNA-binding domain
46966
        1  Spectrin repeat
46977
        2  Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
47060
        1  S15/NS1 RNA-binding domain
47113
        1  Histone-fold
47148
        1  Diol dehydratase, gamma subunit
47175
        1  Cytochromes
47240
        3  Ferritin-like
47323
        5  Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
47364
        9  Domain of the SRP/SRP receptor G-proteins
47384
        4  Homodimeric domain of signal transducing histidine kinase
47413
        30  lambda repressor-like DNA-binding domains
47446
        1  Signal peptide-binding domain
47459
        1  Helix-loop-helix DNA-binding domain
47473
        2  EF-hand
47616
        1  Glutathione S-transferase (GST), C-terminal domain
47648
        1  Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
47661
        2  t-snare proteins
47729
        1  IHF-like DNA-binding proteins
47781
        4  RuvA domain 2-like
47789
        1  C-terminal domain of RNA polymerase alpha subunit
47807
        1  5' to 3' exonuclease, C-terminal subdomain
47823
        4  lambda integrase-like, N-terminal domain
47831
        2  Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
47836
        1  Retroviral matrix proteins
47857
        2  Apolipophorin-III
47917
        3  C-terminal domain of alpha and beta subunits of F1 ATP synthase
47928
        1  N-terminal domain of the delta subunit of the F1F0-ATP synthase
47973
        1  Ribosomal protein S7
47986
        1  DEATH domain
48013
        1  Antitermination factor NusB
48019
        1  DNA polymerase III clamp loader subunits, C-terminal domain
48024
        1  N-terminal domain of DnaB helicase
48108
        1  Carbamoyl phosphate synthetase, large subunit connection domain
48150
        3  DNA-glycosylase
48163
        1  An anticodon-binding domain of class I aminoacyl-tRNA synthetases
48179
        2  6-phosphogluconate dehydrogenase C-terminal domain-like
48208
        1  Six-hairpin glycosyltransferases
48256
        1  Citrate synthase
48329
        1  RNA polymerase sigma subunit
48557
        4  L-aspartase-like
48576
        1  Terpenoid synthases
48592
        1  GroEL equatorial domain-like chaperone equatorial domain
48600
        1  Chorismate mutase II
49265
        3  Fibronectin type III
49299
        1  PKD domain
49303
        2  beta-Galactosidase/glucuronidase domain
49309
        1  Transglutaminase, two C-terminal domains
49373
        5  Invasin/intimin cell-adhesion fragments
49384
        1  Carbohydrate-binding domain
49401
        2  Bacterial adhesins
49478
        1  B repeat unit of collagen binding surface protein (cna)
49493
        2  HSP40/DnaJ peptide-binding domain
49611
        2  Viral coat and capsid proteins
49749
        1  Viral proteins
49764
        1  HSP20-like chaperones
49785
        4  Galactose-binding domain-like
49863
        1  Hyaluronate lyase-like, C-terminal domain
49879
        4  SMAD/FHA domain
49899
        1  Concanavalin A-like lectins/glucanases
49994
        2  beta-Galactosidase, domain 5
50037
        1  C-terminal domain of transcriptional repressors
50044
        1  SH3-domain
50104
        1  Translation proteins SH3-like domain
50129
        4  GroES-like
50151
        1  SacY-like RNA-binding domain
50156
        1  PDZ domain-like
50193
        2  Ribosomal protein L14
50249
        17  Nucleic acid-binding proteins
50324
        1  Inorganic pyrophosphatase
50331
        1  MOP-like
50370
        1  Ricin B-like lectins
50447
        6  Translation proteins
50465
        1  EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
50475
        3  FMN-binding split barrel
50486
        1  FMT C-terminal domain-like
50494
        2  Trypsin-like serine proteases
50615
        2  N-terminal domain of alpha and beta subunits of F1 ATP synthase
50621
        1  Alanine racemase-like, C-terminal domain
50677
        3  ValRS/IleRS/LeuRS editing domain
50715
        3  Ribosomal protein L25-like
50729
        1  PH domain-like
50800
        2  PK beta-barrel domain-like
50891
        1  Cyclophilin (peptidylprolyl isomerase)
50969
        1  YVTN repeat-like/Quinoprotein amine dehydrogenase
50993
        1  Prolyl oligopeptidase, N-terminal domain
51011
        2  alpha-Amylases, C-terminal beta-sheet domain
51064
        1  Head domain of nucleotide exchange factor GrpE
51156
        1  Insect cysteine-rich antifreeze protein
51161
        4  Trimeric LpxA-like enzymes
51182
        1  RmlC-like cupins
51230
        4  Single hybrid motif
51246
        4  Rudiment single hybrid motif
51261
        1  Duplicated hybrid motif
51283
        2  Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
51294
        1  Hedgehog/intein (Hint) domain
51306
        5  LexA/Signal peptidase
51344
        1  Epsilon subunit of F1F0-ATP synthase N-terminal domain
51351
        1  Triosephosphate isomerase (TIM)
51366
        15  Ribulose-phoshate binding barrel
51391
        3  Thiamin phosphate synthase
51395
        12  FMN-linked oxidoreductases
51412
        3  Inosine monophosphate dehydrogenase (IMPDH)
51419
        3  PLP-binding barrel
51430
        6  NAD(P)-linked oxidoreductase
51445
        5  (Trans)glycosidases
51556
        1  Metallo-dependent hydrolases
51569
        6  Aldolase
51604
        1  Enolase C-terminal domain-like
51621
        1  Phosphoenolpyruvate/pyruvate domain
51658
        2  Xylose isomerase-like
51690
        2  Quinolinic acid phosphoribosyltransferase, C-terminal domain
51713
        1  tRNA-guanine transglycosylase
51717
        1  Dihydropteroate synthetase-like
51730
        1  FAD-linked oxidoreductase
51735
        36  NAD(P)-binding Rossmann-fold domains
51971
        9  Nucleotide-binding domain
51998
        3  PFL-like glycyl radical enzymes
52009
        2  Phosphohistidine domain
52016
        1  Aconitase
52021
        1  Carbamoyl phosphate synthetase, small subunit N-terminal domain
52029
        1  GroEL apical domain-like
52058
        1  L domain-like
52080
        2  Ribosomal proteins L15p and L18e
52096
        4  ClpP/crotonase
52113
        1  BRCT domain
52121
        1  Lumazine synthase
52141
        1  DNA glycosylase
52151
        1  FabD/lysophospholipase-like
52156
        1  Initiation factor IF2/eIF5b, domain 3
52161
        1  Ribosomal protein L13
52166
        1  Ribosomal protein L4
52172
        10  CheY-like
52210
        2  Succinyl-CoA synthetase domains
52218
        3  Flavoproteins
52242
        2  Cobalamin (vitamin B12)-binding domain
52255
        1  N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase PurE
52279
        2  Beta-D-glucan exohydrolase, C-terminal domain
52283
        4  Formate/glycerate dehydrogenase catalytic domain-like
52304
        1  Type II 3-dehydroquinate dehydratase
52313
        1  Ribosomal protein S2
52317
        9  Class I glutamine amidotransferase-like
52335
        2  Methylglyoxal synthase-like
52343
        2  Ferredoxin reductase-like, C-terminal NADP-linked domain
52374
        13  Nucleotidylyl transferase
52402
        4  Adenine nucleotide alpha hydrolases-like
52425
        1  Cryptochrome/photolyase, N-terminal domain
52431
        2  ETFP adenine nucleotide-binding domain-like
52440
        5  PreATP-grasp domain
52467
        4  DHS-like NAD/FAD-binding domain
52490
        1  Tubulin, GTPase domain
52499
        1  Cysteine hydrolase
52512
        1  Phosphosugar isomerase
52518
        6  Thiamin diphosphate-binding fold (THDP-binding)
52540
        105  P-loop containing nucleotide triphosphate hydrolases
52788
        2  Phosphotyrosine protein phosphatases I
52821
        1  Rhodanese/Cell cycle control phosphatase
52833
        9  Thioredoxin-like
52922
        1  TK C-terminal domain-like
52935
        1  Pyruvate kinase, C-terminal domain
52943
        1  ATP syntase (F1-ATPase), gamma subunit
52954
        5  Anticodon-binding domain of Class II aaRS
52972
        2  Maf/Ham1
53041
        1  Resolvase-like
53056
        1  beta-carbonic anhydrase, cab
53067
        6  Actin-like ATPase domain
53092
        2  Creatinase/prolidase N-terminal domain
53098
        2  Ribonuclease H-like
53137
        2  Translational machinery components
53146
        1  MTH1175-like
53167
        3  Purine and uridine phosphorylases
53178
        1  Peptidyl-tRNA hydrolase
53182
        1  Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
53223
        2  Aminoacid dehydrogenase-like, N-terminal domain
53244
        3  MurD-like peptide ligases, peptide-binding domain
53254
        8  Phosphoglycerate mutase-like
53271
        9  PRTase-like
53328
        1  Formyltransferase
53335
        8  S-adenosyl-L-methionine-dependent methyltransferases
53383
        21  PLP-dependent transferases
53448
        16  Nucleotide-diphospho-sugar transferases
53474
        17  alpha/beta-Hydrolases
53590
        3  Nucleoside hydrolase
53597
        3  Dihydrofolate reductases
53613
        8  Ribokinase-like
53623
        6  MurD-like peptide ligases, catalytic domain
53639
        2  AraD-like aldolase/epimerase
53659
        2  Isocitrate/Isopropylmalate dehydrogenases
53671
        2  Aspartate/ornithine carbamoyltransferase
53681
        1  Aspartate/glutamate racemase
53686
        4  Tryptophan synthase beta subunit-like PLP-dependent enzymes
53697
        3  SIS domain
53720
        4  ALDH-like
53732
        2  Aconitase iron-sulfur domain
53738
        3  Phosphoglucomutase, first 3 domains
53748
        1  Phosphoglycerate kinase
53756
        1  UDP-Glycosyltransferase/glycogen phosphorylase
53795
        2  PEP carboxykinase-like
53807
        2  "Helical backbone" metal receptor
53822
        27  Periplasmic binding protein-like I
53850
        11  Periplasmic binding protein-like II
53901
        4  Thiolase-like
54001
        2  Cysteine proteinases
54076
        1  RNase A-like
54189
        1  Ribosomal proteins L23 and L15e
54197
        3  HIT-like
54211
        12  Ribosomal protein S5 domain 2-like
54236
        1  Ubiquitin-like
54285
        1  MoaD/ThiS
54292
        1  2Fe-2S ferredoxin-like
54358
        1  Immunoglobulin-binding domains
54364
        1  Translation initiation factor IF3, N-terminal domain
54368
        2  Glutamine synthetase, N-terminal domain
54373
        1  FAD-linked reductases, C-terminal domain
54416
        1  Copper amine oxidase, domains 1 and 2
54423
        1  Disulfide bond isomerase, DsbC, N-terminal domain
54427
        1  NTF2-like
54506
        2  Diaminopimelate epimerase
54523
        1  Pilin
54534
        2  FKBP-like
54556
        1  Chitinase insertion domain
54565
        1  Ribosomal protein S16
54570
        1  Ribosomal protein S19
54621
        1  Heme-binding protein A (HasA)
54631
        2  CBS-domain
54637
        1  Thioesterase/thiol ester dehydrase-isomerase
54675
        1  Quinolinic acid phosphoribosyltransferase, N-terminal domain
54686
        1  Ribosomal protein L10e
54713
        1  Elongation factor Ts (EF-Ts), dimerisation domain
54719
        1  Fe,Mn superoxide dismutase (SOD), C-terminal domain
54736
        2  ClpS-like
54747
        1  Ribosomal protein L11, N-terminal domain
54752
        1  RecA protein, C-terminal domain
54768
        1  dsRNA-binding domain-like
54791
        1  Eukaryotic type KH-domain (eKH-domain)
54806
        1  Alpha-lytic protease prodomain
54810
        1  GMP synthetase C-terminal dimerisation domain
54814
        3  Prokaryotic type KH domain (pKH-domain)
54821
        1  Ribosomal protein S3 C-terminal domain
54826
        2  Enolase N-terminal domain-like
54843
        1  Ribosomal protein L22
54849
        1  GroEL-intermediate domain like
54862
        1  4Fe-4S ferredoxins
54893
        1  Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
54913
        1  GlnB-like
54928
        1  RNA-binding domain, RBD
54966
        1  RuBisCO, large subunit, small (N-terminal) domain
54975
        1  Acylphosphatase-like
54980
        4  EF-G/eEF-2 domains III and V
54984
        1  eEF-1beta-like
54991
        1  Anticodon-binding domain of PheRS
54995
        1  Ribosomal protein S6
54999
        1  Ribosomal protein S10
55008
        1  Metal-binding domain
55021
        2  Regulatory domain in the aminoacid metabolism
55031
        2  Bacterial exopeptidase dimerisation domain
55060
        1  GHMP Kinase
55068
        1  Peptide methionine sulfoxide reductase
55083
        1  6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
55112
        1  Formylmethanofuran:tetrahydromethanopterin formyltransferase
55120
        3  Pseudouridine synthase
55129
        1  Ribosomal protein L30p/L7e
55136
        1  Probable bacterial effector-binding domain
55166
        1  Hedgehog/DD-pepidase
55174
        3  Alpha-L RNA-binding motif
55186
        2  Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
55194
        1  Ribosome recycling factor, RRF
55200
        1  Translation initiation factor IF3, C-terminal domain
55205
        2  EPT/RTPC-like
55252
        1  C-terminal domain of arginine repressor
55257
        1  RBP11-like subunits of RNA polymerase
55261
        1  Prokaryotic AspRS, insert domain
55282
        1  Ribosomal protein L5
55287
        1  RPB5-like RNA polymerase subunit
55298
        1  YjgF-like
55307
        2  Tubulin, C-terminal domain
55326
        1  Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
55331
        1  Tautomerase/MIF
55347
        2  Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
55387
        1  Frataxin-like
55424
        3  FAD/NAD-linked reductases, dimerisation (C-terminal) domain
55447
        1  CO dehydrogenase flavoprotein C-terminal domain-like
55469
        2  NADH oxidase/flavin reductase
55550
        1  SH2 domain
55594
        2  HPr-like
55604
        1  Glucose permease domain IIB
55608
        1  Homing endonucleases
55620
        3  Tetrahydrobiopterin biosynthesis enzymes-like
55653
        1  Ribosomal protein L9 C-domain
55658
        1  L9 N-domain-like
55666
        1  Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
55681
        9  Class II aaRS and biotin synthetases
55729
        9  Acyl-CoA N-acyltransferases (Nat)
55753
        1  Actin depolymerizing proteins
55785
        1  PYP-like sensor domain (PAS domain)
55811
        9  Nudix
55821
        1  YrdC/RibB
55826
        1  Hypothetical protein HI1434 (YbaK homologue)
55831
        1  Thymidylate synthase/dCMP hydroxymethylase
55874
        11  ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
55920
        2  Creatinase/aminopeptidase
55931
        2  Glutamine synthase/guanido kinase
55973
        2  S-adenosylmethionine synthetase
55979
        1  DNA clamp
56024
        1  Phospholipase D/nuclease
56037
        1  B3/B4 domain of PheRS, PheT
56042
        1  Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
56047
        1  Ribosomal protein S8
56053
        1  Ribosomal protein L6
56059
        9  Glutathione synthetase ATP-binding domain-like
56091
        1  DNA ligase/mRNA capping enzyme, catalytic domain
56104
        1  SAICAR synthase-like
56112
        9  Protein kinase-like (PK-like)
56176
        1  FAD-binding domain
56194
        1  Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
56219
        1  DNase I-like
56235
        4  N-terminal nucleophile aminohydrolases (Ntn hydrolases)
56295
        2  Protein serine/threonine phosphatase 2
56317
        1  Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase
56322
        1  ADC synthase
56327
        3  Lactate & malate dehydrogenases, C-terminal domain
56349
        8  DNA breaking-rejoining enzymes
56420
        3  Peptide deformylase
56425
        3  Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
56436
        3  C-type lectin-like
56529
        2  FAH
56553
        1  Insert subdomain of RNA polymerase alpha subunit
56574
        1  Serpins
56601
        4  beta-Lactamase/D-ala carboxypeptidase
56655
        1  Sugar phosphatases
56712
        2  Prokaryotic type I DNA topoisomerase
56719
        4  Type II DNA topoisomerase
56731
        1  DNA primase DnaG catalytic core
56752
        1  D-aminoacid aminotransferase-like PLP-dependent enzymes
56778
        1  Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment
56784
        16  HAD-like
56796
        3  Dehydroquinate synthase-like
56801
        4  Firefly luciferase-like
56808
        1  Ribosomal protein L1
56837
        1  Colicin
56935
        2  Porins
57095
        1  Scorpion toxin-like
57262
        1  Leech antihemostatic proteins
57620
        1  Carboxypeptidase inhibitor
57716
        1  Glucocorticoid receptor-like (DNA-binding domain)
57756
        1  Retrovirus zinc finger-like domains
57770
        1  Methionyl-tRNA synthetase (MetRS), Zn-domain
57825
        1  Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
57840
        1  Ribosomal protein L36
57868
        1  Metallothionein
57938
        1  Cysteine-rich domain of the chaperone protein DnaJ.
63380
        2  Riboflavin synthase domain-like
63411
        5  LuxS/MPP-like metallohydrolase
63418
        1  MurE/MurF N-terminal domain
63520
        1  PTS-regulatory domain, PRD
63724
        1  Equinatoxin II (eqtII, tenebrosin C)
63817
        3  Sortase
63848
        1  Cell-division inhibitor MinC, C-terminal domain
63887
        1  P-domain of calnexin/calreticulin
64005
        1  Undecaprenyl diphosphate synthase
64197
        1  AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
64263
        1  Prokaryotic ribosomal protein L17
64449
        2  YopH tyrosine phosphatase N-terminal domain
68906
        1  SAP domain
69055
        1  1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
69065
        1  RNase III endonuclease catalytic domain
69255
        1  Tail-associated lysozyme gp5, N-terminal domain
69287
        55  Urease metallochaperone UreE, N-terminal domain
69336
        1  Alpha subunit of glutamate synthase, C-terminal domain
69349
        1  Phage fibre proteins
69500
        1  D-Tyr tRNAtyr deacylase
69572
        1  Molybdenum cofactor biosynthesis protein MoeB
69705
        1  Transcription factor NusA, N-terminal domain
69765
        1  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
69848
        1  LCCL domain
69864
        1  Argininosuccinate synthetase, C-terminal domain
69898
        1  Golgi alpha-mannosidase II
74650
        3  Galactose mutarotase-like
74731
        1  Ribosomal protein L20
74982
        1  Small protein B (SmpB)
75005
        5  alpha-L-arabinanase
75217
        4  alpha/beta knot
75304
        1  Amidase signature (AS) enzymes
75420
        1  YhbC-like, N-terminal domain
75445
        1  D-ribose-5-phosphate isomerase (RpiA), lid domain
75471
        1  YhbY-like
75500
        3  Putative transcriptional regulator TM1602, C-terminal domain
75620
        2  Polypeptide chain release factor 2 (RF2)
75625
        1  YebC-like
75708
        1  Chemotaxis phosphatase CheZ
81271
        1  TGS-like
81296
        7  E set domains
81593
        1  Nucleotidyltransferase substrate binding subunit/domain
81606
        2  Protein serine/threonine phosphatase 2C, catalytic domain
81653
        4  Calcium ATPase, transduction domain A
81660
        3  Calcium ATPase, ATP-binding domain N
81736
        1  Pollen allergen Phl P 6
81767
        1  Pre-protein croslinking domain of SecA
81799
        1  Putative methyltransferase TM0872, insert domain
81886
        1  Helical scaffold and wing domains of SecA
81923
        2  Double Clp-N motif
81986
        1  Tp47 lipoprotein, middle and C-terminal domains
82051
        56  Obg GTP-binding protein N-terminal domain
82114
        1  Riboflavin kinase
82171
        1  Dipeptidyl peptidase IV/CD26, N-terminal domain
82679
        1  N-utilization substance G protein NusG, N-terminal domain
82708
        1  R3H domain
82771
        1  GIY-YIG endonuclease