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Protein Alignments organised as Structural Superfamilies



Superfamily :     GIY-YIG endonuclease
Class :    Alpha and beta proteins (a+b)
Fold :    GIY-YIG endonuclease
Number of Members :     1
Average Size :     97


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code
Start
Residue
Start
Chain
End
Residue
End
Chain
Domain
Size
Name Source Resolution R-factor
1mk0a- 1 A 97 A 97 intron-associated endonuclease 1 bacteriophage t4 1.60 0.197

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment)



 

1mk0a- ( 1 ) mksGIYqIkNtlnnkvyVgsAkdFekrwkrHfkdLekgcHsSikLqrsfn

bbbbbbb bbbbbb aaaaaaaaaaaaaa aaaaaaaa



1mk0a- ( 51 ) khgnvFecsileeipyekdlIierAnfwIkelnSkinGYniadatfg

aa bbbbbbbb aaaaaaaaaaaaaa






Key

solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x



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