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Protein Alignments organised as Structural Superfamilies


Superfamily :     Helical domain of Sec23/24
Class :    All alpha proteins
Fold :    ERP29 C domain-like
Number of Members :     2
Average Size :     105


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1m2oa1 524 A 626 A 103 gtp-binding protein sar1 saccharomyces cerevisiae 2.50 0.238
1m2vb1 647 B 753 B 107 protein transport protein sec24 saccharomyces cerevisiae 2.75 0.210

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1m2oa1  ( 524 )    dqeaaAVlmAriAVhkAetddgadVirwLdrtliklcqky----------
1m2vb1  ( 647 )    dqlaiAsfyNskAVekAlnsslddArvlInksvqdilatykkeivvsnta
                    aaaaaaaaaaaaaaa      aaaaaaaaaaaaaaaaaa          
 


    
1m2oa1  ( 564 )    --AdynkddpqsfrLapnfslypqfTyyLrrsqFLs--vfnnspdetafy
1m2vb1  ( 697 )    gg--------aplrlcanlrmFplLMhsLtkhmAFrsg-iV-psdhrasa
                                        aaaaaaaaa             aaaaaaa
 


    
1m2oa1  ( 610 )    rhiFtredttnSlimIq
1m2vb1  ( 737 )    LnnLeslplkyLiknIy
                   aaaa    aaaaaaaa 
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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