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Protein Alignments organised as Structural Superfamilies


Superfamily :     DNA polymerase beta-like, second domain
Class :    All alpha proteins
Fold :    SAM domain-like
Number of Members :     2
Average Size :     59


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1jmsa3 243 A 302 A 60 terminal deoxynucleotidyltransferase mus musculus 2.36 0.214
1jn3a1 91 A 148 A 58 dna polymerase beta rattus norvegicus 2.35 0.215

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1jmsa3  ( 243 )    derykSfklFtsVfgVglkTAekWfrmgfrtlskIqsd--kslrftqmQk
1jn3a1  (  91 )    ddtsssinfLtrVtgIgpsaArkLVdegIktledLrkned--k-Lnhhqr
                    aaaaaaaaa       aaaaaaaaa     aaaaa          aaaa
 


    
1jmsa3  ( 291 )    aGflyyedlvsc
1jn3a1  ( 138 )    iGLkyFedfek 
                   aaaa        
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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