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Protein Alignments organised as Structural Superfamilies


Superfamily :     Rotavirus NSP2 fragment, C-terminal domain
Class :    Alpha and beta proteins (a+b)
Fold :    HIT-like
Number of Members :     1
Average Size :     170


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1l9va1 144 A 313 A 170 rotavirus-nsp2 simian 11 rotavirus (serotype 3 / 2.60 0.241

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1l9va1  ( 144 )    keiettitAeggeivfqnaaFTMwkLtylehqlmpildqnfieyKVTlne
                               bbbbb   bbbbb  333            bbbbbb  
 


    
1l9va1  ( 194 )    dkpisdvhVkeLvaeLrwqynkfAvIThgkgHYrIVkyssvanHAdrvya
                        aaaaaaaaaaaaaa   bbbbb     bbbbbaaaaaaaaaaaaa
 


    
1l9va1  ( 244 )    tfksnvktgvnndfnlldqrIIwqnWyaFTssMkqgntldvCkrlLfqkm
                   aaa                    aaaaaaaaaaaa   aaaaaaaaa   
 


    
1l9va1  ( 294 )    kpeknpfkglstdrkmdevs
                            aaaaaaaaaa 
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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