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Protein Alignments organised as Structural Superfamilies |
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|
| Alignment | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1ipaa1 | 106 | A | 263 | A | 158 | rna 2'-o-ribose methyltransferase | thermus thermophilus | 2.40 | 0.226 |
| 1k3ra2 | 1 | A | 262 | A | 191 | conserved protein mt0001 | methanobacterium thermoautotrophic | 2.30 | 0.221 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1ipaa1 ( 106 ) tleeyrpspdAlILVaVg-----------------LekpgnLGaVLr
1k3ra2 ( 1 ) mnr-----------VdLSLFIPDSLTaetgdlkikTyk--VVlIArAAsi
bbbbb aaaaaaaaa
1ipaa1 ( 136 ) sA--daAgAeAVlVAg------------g--vd--l--------------
1k3ra2 ( 38 ) -fgV-------krIVIYhddadgearFIrdILtyMdtpqylrrkvfpimr
bbb
1ipaa1 ( 154 ) -------yspqVir--nStg-vVfslrTlaa--------se--seVl--d
1k3ra2 ( 80 ) eLkhVgi--L---ppl---rt-----gYeVldtrrnLae-Slkt--vgA-
bbb a a a
1ipaa1 ( 182 ) wIkqhnLpLVAtT----------phaeal-ywe---a-nL--rppVAIAv
1k3ra2 ( 184 ) --------dvvVAtsrnaspIts-----il-deVktrM-rga---reAAI
bbb bbbb
1ipaa1 ( 215 ) Gpehe--------gLraaWl-eaAqtqV-r---ipmqgqa---------d
1k3ra2 ( 216 ) LF--gGpykgLpe---I--dA-----dIwVnTl--p-g-qctetvrTee-
b
1ipaa1 ( 243 ) slnvsvsAalLLyEAlrqrll
1k3ra2 ( 249 ) --aVlaTLsvFnmLtq
aaaaaaaaaaa
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x