Home
About pass2
Superfamily list
Align query
Useful tools
Search
Help
Lab page
Protein Alignments organised as Structural Superfamilies


Superfamily :     Thymidylate synthase-complementing protein Thy1
Class :    Alpha and beta proteins (a+b)
Fold :    Thymidylate synthase-complementing protein Thy1
Number of Members :     1
Average Size :     199


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1kq4a- 0 A 215 A 199 hypothetical protein tm0449 thermotoga maritima 2.25 0.192

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1kq4a-  (   0 )    h kidiLdkGfVeLvdv gndlsAVraarvsf erdrhlIeyl khghet
                      bbb   bbbbbbb    aaaaaaaaa     aaaaaaaa       3
 


    
1kq4a-  (  56 )    pfehIvFtFhVkAPifVArqWfrhriasynels syefYipsperlegyk
                   3333 bbbbbbbbbaaaaaaa      bbbb           3333    
 


    
1kq4a-  ( 111 )    ttippervtekiseivdkayrtYleliesgvprevArivLplnlYtrFfW
                       aaaaaaaaaaaaaaaaaaaaaaaa    aaaa333     bbbbbb
 


    
1kq4a-  ( 161 )    tVnArsLnFLnlrAdshaqwEIqqYAlAIAriFkekCpwtFeaflkyayk
                   bbb     aaaaa      aaaaaaaaaaaaaaaaa aaaaaaaaaa   
 


    
1kq4a-  ( 212 )    Gdil
                       
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


  Enter Search key:




 
Your suggestions and further clarifications are most welcome.

-contact mini@ncbs.res.in