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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1hh2p4 | 1 | P | 126 | P | 126 | n utilization substance protein a | thermotoga maritima | 2.1 | 0.2439 |
| 1k0ra4 | -4 | A | 99 | A | 104 | nusa | mycobacterium tuberculosis | 1.70 | 0.248 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1hh2p4 ( 1 ) Mnigllealdq-leeekgisk-------------ee---Vipi
1k0ra4 ( -4 ) vsrrhmn-----idm--aa--------lhaievdrgisvne-llet--i-
1hh2p4 ( 27 ) LekaLvsayrknf--gnsk-nVeVvIdrntgnIkVy-qlLeVveevedpa
1k0ra4 ( 27 ) -ksalltaYrhtqgh---qtdarIeIdrktGvvrviAr-----------e
b
1hh2p4 ( 73 ) t---------qisleeAkkidplAevgsiVkkeln-vkn-fgriaAq--t
1k0ra4 ( 62 ) tdeagnlise-----------------------wdd-tpe---gfgriaa
1hh2p4 ( 110 ) akqvliqrireleke-kq
1k0ra4 ( 85 ) -ttarqvmlqrfrdae
aaaaaaa
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x