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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1ck7a3 | 217 | A | 277 | A | 61 | gelatinase a | homo sapiens | 2.80 | 0.286 |
| 1i71a- | 0 | A | 82 | A | 83 | apolipoprotein(a) | homo sapiens | 1.45 | 0.173 |
| 1pdc-- | -4 | - | 42 | - | 45 | seminal fluid protein pdc-109 (domain b) | bovine (bos taurus) seminal fluid | --- | --- |
| 1pmla- | -1 | A | 82 | A | 86 | tissue plasminogen activator kringle 2 (e.c.3.4.21.68) | human (homo sapiens) | 2.38 | --- |
| 2hpqp- | 301 | P | 379 | P | 79 | alpha-thrombin (e.c.3.4.21.5) complex with | thrombin | 3.3 | --- |
| 2pf1-1 | 66 | - | 156 | - | 91 | prothrombin fragment 1 (residues 1 - 156) | bovine (bos taurus) | 2.2 | --- |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1ck7a3 ( 217 ) egqvvrVkygnAdgeyÇkF-----pFlfn----------
1i71a- ( 0 ) dçyhgdGqsyrgsfstTv----tgrtÇQsWssmtphwHqrtte--yypn
1pdc-- ( -4 ) dyakçvf-------pFiyggk------
1pmla- ( -1 ) sdçyfgnGsaYrgthslTe----sgasÇlpWnsmiLigkvyTAqnpsaqa
2hpqp- ( 301 ) çvpdrGqqyqgrlavtt----hglpÇlaWasaqAk--alskhqdfnsa
2pf1-1 ( 66 ) çAegvGmnYrgnvsvTr----sgieÇQlWrsryphkPeinst--thpg
1ck7a3 ( 241 ) --gkeynsçtdtgrsdgflWÇSttynfekd-gkyGfÇphe
1i71a- ( 43 ) ggLt-rnyÇRNPdae-irPWÇYTmdp---sv-rweyÇnLtqçpv------
1pdc-- ( 11 ) ----kyetçtki-gsmwmsWÇSlspnYdkd-rAwkyç
1pmla- ( 44C) lgLgkhnyÇRNPdgd-akPWÇHVlkn---rrltweyÇdVpsçst
2hpqp- ( 343 ) Vqlv-enfÇRNPdgdeeGVWÇYvagk---p-gdfgyÇdlnyç
2pf1-1 ( 108 ) adLr-enfÇRNPdgsitGPWÇYTtsp---tl-rreeÇsVpvçgqdrvtve
bbb bbb
1ck7a3 ( )
1i71a- ( 81 ) --me
1pdc-- ( )
1pmla- ( )
2hpqp- ( )
2pf1-1 ( 153 ) vipr
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x