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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs | Structural Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1btea- | 7 | A | 102 | A | 92 | activin receptor type ii | mus musculus | 1.50 | 0.181 |
| 1es7b- | 232 | B | 317 | B | 83 | bone morphogenetic protein receptor ia | homo sapiens | 2.90 | 0.191 |
| 1f94a- | 1 | A | 63 | A | 63 | bucandin | bungarus candidus | 0.97 | 0.123 |
| 1fas-- | 1 | - | 61 | - | 61 | fasciculin 1 | green mamba (dendroaspis angusticeps) | 1.8 | 0.123 |
| 1jgka- | 1 | A | 66 | A | 66 | candoxin | bungarus candidus | --- | --- |
| 1ktzb- | 25 | B | 130 | B | 106 | tgf-beta type ii receptor | homo sapiens | 2.15 | 0.201 |
| 1ntn-- | 1 | - | 72 | - | 72 | neurotoxin-i | central asian cobra (naja naja oxiana) venom | 1.9 | 0.201 |
| 1tgxa- | 1 | A | 60 | A | 60 | toxin gamma (cardiotoxin) | (naja nigricollis) venom | 1.55 | 0.201 |
| 3ebx-- | 1 | - | 62 | - | 62 | erabutoxin $b | sea snake (laticauda $semifasciata) venom | 1.4 | 0.201 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1btea- ( 7 ) eTqeÇlffNa---nwerdrt---nqtgvepÇy-grrhÇfAtWkni---
1es7b- ( 232 ) tlpfLkÇyÇsgh---çpddai------nntçit---nGhÇfAiieed---
1f94a- ( 1 ) meÇyrçg-----v----s---gçhlkitÇsaeetfÇykwlnkis--
1fas-- ( 1 ) tmÇyshtt---ts----r-----ailtnÇg--ensÇyrkSrrhpp-
1jgka- ( 1 ) mkÇkiçNf---dt----ç---ragelkvçAsgekyÇfkeswrear-
1ktzb- ( 25 ) pqlÇkfÇdvrfstÇdnqksÇmSnÇsitsiÇekpqevÇVAVwrknd--
1ntn-- ( 1 ) itÇyktp---------------iitsetÇapgqnlÇytktwçdawç
1tgxa- ( 1 ) lkÇnqli---------------ppfwktÇpkgknlÇykmtmraap-
3ebx-- ( 1 ) riÇfnhqs---sq----p-----qttktÇspgessÇyhkqwsdfr-
bbb bbb bbbbbbb
1btea- ( 49 ) sgsieivkQGçwld-------dinçydrtdÇiEkk---dspevyfÇÇÇeg
1es7b- ( 270 ) ---ettlasGçMky-------egSdfqçk--dspk---aqlrrtieççrt
1f94a- ( 33 ) ----nerwLgÇak----------------tçteid---tw-nvyNkççtt
1fas-- ( 32 ) ---kmvlgRgçg------------------çppgd---d--yleVkççts
1jgka- ( 36 ) ---gtriergçaa----------------tçpkgs---vy-gLyvlççtt
1ktzb- ( 70 ) --enitLeTVÇhdpklpyhdfiLedaaspkÇiMkekkkpgetFfMÇSÇss
1ntn-- ( 32 ) gsrgkvieLgÇaa----------------tçptve---s--yqdikççst
1tgxa- ( 31 ) ---mvpvkrgÇid----------------vçpkss---l--likymççnt
3ebx-- ( 34 ) ---gtiieRgçg------------------çptvk---p--gikLsççes
bbbbbbb bbbbb
1btea- ( 89 ) -nmçNekfsyfPeme
1es7b- ( 305 ) -nlçNqylqPtlp-p
1f94a- ( 59 ) -nlçNt
1fas-- ( 56 ) pdkçNy
1jgka- ( 63 ) -ddçN
1ktzb- ( 118 ) -deçNdnIifs-eey
1ntn-- ( 61 ) -dnçNphpkqkr--p
1tgxa- ( 57 ) -dkçN
3ebx-- ( 58 ) -evçNn
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x