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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1cy9a- | 214 | A | 473 | A | 245 | dna topoisomerase i | escherichia coli | 1.80 | 0.205 |
| 1gkub3 | 499 | B | 1054 | B | 532 | reverse gyrase | archaeoglobus fulgidus | 2.7 | 0.226 |
| 1i7da- | 1 | A | 620 | A | 620 | 5'-d(*cp*gp*cp*ap*ap*cp*tp*t)-3' | escherichia coli | 2.05 | 0.233 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1cy9a- ( 214 )
1gkub3 ( 499 ) qefdlikpALFIVesptKArQISrffgkpsvkvldgAvVyeipmqkyvLm
1i7da- ( 1 ) mrLFIAekpsLAraIAdvLpk-phrkgdgfieCg---n--gqV
1cy9a- ( 214 )
1gkub3 ( 549 ) VTASighVvdLit--------nrgfhGVlvngrfvpvyasikdnsrsrie
1i7da- ( 38 ) VTwCighLLeqAqPdaydsryarwnladLPIvPekwqlqprps-vtkqln
1cy9a- ( 214 )
1gkub3 ( 615 ) ALrklAhdAefVIVGTdPdteGEKIAwDLknlLs----gcgaVkRAeFhe
1i7da- ( 87 ) vIkrFLheAseIVHAGDpdreGQLLVdeVLdylqLapekrqqVqRClInD
1cy9a- ( 214 )
1gkub3 ( 661 ) VtrraIleALeslrdVd--enlVkAqvVrrIEdrWIgfVLsqkLwerfn-
1i7da- ( 137 ) lnpqaVeraidrLrsnsefvplcvSAlArarAdwLYgiNMtRAYTiLGrn
1cy9a- ( 214 ) fvpeefweVdAsTtTpsgeaL
1gkub3 ( 708 ) ---nrnLsAgRaQTlVLGwIidrfqesr----errkiAiVr-----dfdl
1i7da- ( 187 ) agYqgvLSVgrvqTPVLGlVVrrDeeienfvakdFfeVkAhIvtpaderF
bbbbbbb b
1cy9a- ( 235 ) aLqVthqnd------kpFrPvnkeqTqaAvslLekarYsVleredkptts
1gkub3 ( 746 ) vleHdee---------------------------efdLtIklveereelr
1i7da- ( 237 ) tAiWqpseacepyqdeegrLlhrplAehvvnrIsgqpAiVtsyndkrese
bb bb bbbbbbbbb
1cy9a- ( 279 ) kPgaPFiTstLqqaAstrlgFgvkkTmmMAqrLye-agyItymrtdstnL
1gkub3 ( 769 ) tPlpPYtTetMLsDAnrilkfsVkqTmqiAqeLFe-NgLITYHrTdstrV
1i7da- ( 287 ) sAplPFSLSaLQieAAkrfglsaqnVldiCqkLyethkLItfPrSdcryL
aaaaaaaaaa aaaaaaaaaaaaa
1cy9a- ( 328 ) sqdAvnmVrgyIsd--nfgkkylpe------------spnqyasheAIrP
1gkub3 ( 818 ) sdvGqriAkeyLg----------------ddfvgrewg--esgaheCIRP
1i7da- ( 337 ) PeehfagrhavmnAIsvHapdllpqpvVdpdirnrCWddkkVdahhAIIP
aaaaa
1cy9a- ( 371 ) sdVnvmAesLk-----------dMeadAqkLYqlIwrqFVACQMtpAkyd
1gkub3 ( 850 ) Tr-pltrddVqrliqegvlvVegLrweHfaLYdlIFrrFMASQCrpFkVv
1i7da- ( 387 ) ta-rss-----------ainLt---enEakVYnLIARQYLMQFCpdAvFr
aaaaaaaaaaaaaaaa bbbb
1cy9a- ( 410 ) sttLtVgAgdFrLkArGrilrfdGwtkVmd----------riLpaVnkgd
1gkub3 ( 899 ) VkkysIefdgktaeeeRivrAegrAyeLy-----ravwvkneLpt-----
1i7da- ( 422 ) kcvIeLdIakGkFvakarfLaeaGWRtLlgskerdeendgtpLpvVakgd
bbbbbb bbb bbbbb
1cy9a- ( 458 ) aLtlveLtpaqhftkp
1gkub3 ( 939 ) gtfrVkAevksvpkv--lpFtqseIIqmMker-----------------g
1i7da- ( 472 ) eLlCekGeVverqtqpprhFtdatLLsAMtgIArfVqdkdlkkiLratdG
bbbbbb bbbb
1cy9a- ( )
1gkub3 ( 970 ) IGrpstYatiVdrLfmrnYVvekygrMiPtklGidVfrfLvrryakFVse
1i7da- ( 522 ) LgtEatRAgiielLfkrgFLtkkgryIhStdAGkaLfhSLp---emATrP
1cy9a- ( )
1gkub3 (1020 ) drTrdLesrMdaIergeld----ylkALedMyaeIksid
1i7da- ( 569 ) dmTAhWesvLtqIsekqcryqdFMqplvgtLyqLIdqAkrtpvrqFrgiv
1cy9a- ( )
1gkub3 ( )
1i7da- ( 619 ) ap
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x