Home
About pass2
Superfamily list
Align query
Useful tools
Search
Help
Lab page
Protein Alignments organised as Structural Superfamilies


Superfamily :     Non-globular alpha+beta subunits of globular proteins
Class :    Alpha and beta proteins (a+b)
Fold :    Non-globular alpha+beta subunits of globular proteins
Number of Members :     2
Average Size :     88


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1jyoe- 36 E 137 E 102 protein tyrosine phosphatase sptp salmonella typhimurium 1.90 0.224
1qgwa- 1 A 76 A 75 cryptophytan phycoerythrin (beta chain) rhodomonas sp. 'cs 24' 1.63 0.149

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1jyoe-  (  36 )           dkAyvap-----------------ekfssk----vltwlGkmp
1qgwa-  (   1 )    amdsakapqitifdhrgcsrapkestggkag------gqddemmvkvast
                             bb                               bb     
 


    
1jyoe-  (  58 )    l----fkntevvqkhTenIrvqdqkilqtflhaltekygetavndallms
1qgwa-  (  46 )    kvtvs----------------------------------esdaakklqef
                                                          aaaaaaaaaaa
 


    
1jyoe-  ( 104 )    rinm----nkpltqrlavqitecvkaadegfinliksk
1qgwa-  (  62 )    itfekgidgpftskn                       
                                                         
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


  Enter Search key:




 
Your suggestions and further clarifications are most welcome.

-contact mini@ncbs.res.in